Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS17560 and HSERO_RS17565 are separated by 11 nucleotides HSERO_RS17565 and HSERO_RS17570 are separated by 21 nucleotides HSERO_RS17570 and HSERO_RS17575 are separated by 38 nucleotides HSERO_RS17575 and HSERO_RS17580 are separated by 37 nucleotides
HSERO_RS17560: HSERO_RS17560 - glutamate/aspartate transporter permease GltK, at 4,025,621 to 4,026,304
_RS17560
HSERO_RS17565: HSERO_RS17565 - glutamate/aspartate ABC transporter permease GltJ, at 4,026,316 to 4,027,041
_RS17565
HSERO_RS17570: HSERO_RS17570 - 4-carboxymuconolactone decarboxylase, at 4,027,063 to 4,027,638
_RS17570
HSERO_RS17575: HSERO_RS17575 - ABC transporter, at 4,027,677 to 4,028,594
_RS17575
HSERO_RS17580: HSERO_RS17580 - hypothetical protein, at 4,028,632 to 4,029,954
_RS17580
Position (kb) 4027
4028 Strain fitness (log2 ratio) -2
-1
0
1 at 4026.162 kb on - strand, within HSERO_RS17560 at 4026.186 kb on + strand, within HSERO_RS17560 at 4026.186 kb on + strand, within HSERO_RS17560 at 4026.189 kb on - strand, within HSERO_RS17560 at 4026.225 kb on - strand, within HSERO_RS17560 at 4026.401 kb on - strand, within HSERO_RS17565 at 4026.425 kb on + strand, within HSERO_RS17565 at 4026.453 kb on + strand, within HSERO_RS17565 at 4026.802 kb on + strand, within HSERO_RS17565 at 4026.936 kb on + strand, within HSERO_RS17565 at 4026.988 kb on - strand at 4027.244 kb on + strand, within HSERO_RS17570 at 4027.837 kb on - strand, within HSERO_RS17575 at 4027.874 kb on + strand, within HSERO_RS17575 at 4027.889 kb on + strand, within HSERO_RS17575 at 4027.889 kb on + strand, within HSERO_RS17575 at 4027.931 kb on - strand, within HSERO_RS17575 at 4027.952 kb on - strand, within HSERO_RS17575 at 4028.008 kb on - strand, within HSERO_RS17575 at 4028.010 kb on + strand, within HSERO_RS17575 at 4028.038 kb on - strand, within HSERO_RS17575 at 4028.069 kb on + strand, within HSERO_RS17575 at 4028.077 kb on - strand, within HSERO_RS17575 at 4028.090 kb on + strand, within HSERO_RS17575 at 4028.112 kb on + strand, within HSERO_RS17575 at 4028.135 kb on + strand, within HSERO_RS17575 at 4028.135 kb on + strand, within HSERO_RS17575 at 4028.143 kb on - strand, within HSERO_RS17575 at 4028.155 kb on - strand, within HSERO_RS17575 at 4028.324 kb on + strand, within HSERO_RS17575 at 4028.324 kb on + strand, within HSERO_RS17575 at 4028.445 kb on - strand, within HSERO_RS17575
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 4,026,162 - HSERO_RS17560 0.79 -0.4 4,026,186 + HSERO_RS17560 0.83 -0.2 4,026,186 + HSERO_RS17560 0.83 +0.1 4,026,189 - HSERO_RS17560 0.83 +0.3 4,026,225 - HSERO_RS17560 0.88 -0.2 4,026,401 - HSERO_RS17565 0.12 -0.1 4,026,425 + HSERO_RS17565 0.15 -0.6 4,026,453 + HSERO_RS17565 0.19 +0.9 4,026,802 + HSERO_RS17565 0.67 -0.4 4,026,936 + HSERO_RS17565 0.85 -0.6 4,026,988 - -0.4 4,027,244 + HSERO_RS17570 0.31 +0.3 4,027,837 - HSERO_RS17575 0.17 -0.3 4,027,874 + HSERO_RS17575 0.21 -1.3 4,027,889 + HSERO_RS17575 0.23 +0.5 4,027,889 + HSERO_RS17575 0.23 +0.7 4,027,931 - HSERO_RS17575 0.28 -0.5 4,027,952 - HSERO_RS17575 0.30 -0.6 4,028,008 - HSERO_RS17575 0.36 -0.7 4,028,010 + HSERO_RS17575 0.36 -2.0 4,028,038 - HSERO_RS17575 0.39 -0.3 4,028,069 + HSERO_RS17575 0.43 +0.2 4,028,077 - HSERO_RS17575 0.44 +0.4 4,028,090 + HSERO_RS17575 0.45 -1.3 4,028,112 + HSERO_RS17575 0.47 +0.6 4,028,135 + HSERO_RS17575 0.50 +0.2 4,028,135 + HSERO_RS17575 0.50 +0.1 4,028,143 - HSERO_RS17575 0.51 +1.5 4,028,155 - HSERO_RS17575 0.52 -0.2 4,028,324 + HSERO_RS17575 0.70 -0.2 4,028,324 + HSERO_RS17575 0.70 -0.5 4,028,445 - HSERO_RS17575 0.84 +0.4
Or see this region's nucleotide sequence