Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS13435

Experiment: L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS13420 and HSERO_RS13425 are separated by 195 nucleotidesHSERO_RS13425 and HSERO_RS13430 are separated by 48 nucleotidesHSERO_RS13430 and HSERO_RS13435 are separated by 151 nucleotidesHSERO_RS13435 and HSERO_RS13440 overlap by 4 nucleotidesHSERO_RS13440 and HSERO_RS13445 overlap by 13 nucleotides HSERO_RS13420: HSERO_RS13420 - 2-hydroxyacid dehydrogenase, at 3,055,132 to 3,056,064 _RS13420 HSERO_RS13425: HSERO_RS13425 - hypothetical protein, at 3,056,260 to 3,056,502 _RS13425 HSERO_RS13430: HSERO_RS13430 - hypothetical protein, at 3,056,551 to 3,056,799 _RS13430 HSERO_RS13435: HSERO_RS13435 - malonyl CoA-ACP transacylase, at 3,056,951 to 3,057,895 _RS13435 HSERO_RS13440: HSERO_RS13440 - 2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase, at 3,057,892 to 3,058,830 _RS13440 HSERO_RS13445: HSERO_RS13445 - phosphoribosyl-dephospho-CoA transferase, at 3,058,818 to 3,059,531 _RS13445 Position (kb) 3056 3057 3058Strain fitness (log2 ratio) -1 0 1at 3056.159 kb on - strandat 3056.351 kb on + strand, within HSERO_RS13425at 3056.529 kb on + strandat 3056.910 kb on - strandat 3056.933 kb on - strandat 3057.178 kb on - strand, within HSERO_RS13435at 3057.384 kb on - strand, within HSERO_RS13435at 3057.385 kb on - strand, within HSERO_RS13435at 3057.427 kb on - strand, within HSERO_RS13435at 3057.492 kb on - strand, within HSERO_RS13435at 3057.612 kb on - strand, within HSERO_RS13435at 3057.618 kb on - strand, within HSERO_RS13435at 3057.865 kb on - strandat 3057.870 kb on - strandat 3058.129 kb on + strand, within HSERO_RS13440at 3058.390 kb on - strand, within HSERO_RS13440at 3058.716 kb on + strand, within HSERO_RS13440at 3058.773 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine
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3,056,159 - -0.1
3,056,351 + HSERO_RS13425 0.37 -0.5
3,056,529 + +0.1
3,056,910 - -0.0
3,056,933 - +0.2
3,057,178 - HSERO_RS13435 0.24 -1.3
3,057,384 - HSERO_RS13435 0.46 +0.8
3,057,385 - HSERO_RS13435 0.46 +0.8
3,057,427 - HSERO_RS13435 0.50 +1.0
3,057,492 - HSERO_RS13435 0.57 +0.5
3,057,612 - HSERO_RS13435 0.70 -0.0
3,057,618 - HSERO_RS13435 0.71 +0.3
3,057,865 - -1.0
3,057,870 - -0.0
3,058,129 + HSERO_RS13440 0.25 +0.0
3,058,390 - HSERO_RS13440 0.53 +0.4
3,058,716 + HSERO_RS13440 0.88 +0.1
3,058,773 + -0.8

Or see this region's nucleotide sequence