Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09335

Experiment: L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS09330 and HSERO_RS09335 are separated by 1 nucleotidesHSERO_RS09335 and HSERO_RS09340 are separated by 160 nucleotides HSERO_RS09330: HSERO_RS09330 - cysteinyl-tRNA synthetase, at 2,121,108 to 2,122,499 _RS09330 HSERO_RS09335: HSERO_RS09335 - DNA-3-methyladenine glycosylase, at 2,122,501 to 2,123,160 _RS09335 HSERO_RS09340: HSERO_RS09340 - acetyl-CoA carboxylase subunit alpha, at 2,123,321 to 2,124,301 _RS09340 Position (kb) 2122 2123 2124Strain fitness (log2 ratio) -1 0 1 2 3at 2122.566 kb on + strandat 2122.856 kb on - strand, within HSERO_RS09335at 2122.979 kb on + strand, within HSERO_RS09335at 2123.132 kb on + strandat 2123.140 kb on - strandat 2123.174 kb on - strandat 2123.174 kb on - strandat 2123.201 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine
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2,122,566 + +2.9
2,122,856 - HSERO_RS09335 0.54 +0.5
2,122,979 + HSERO_RS09335 0.72 +0.1
2,123,132 + -0.2
2,123,140 - +0.8
2,123,174 - +0.8
2,123,174 - +0.8
2,123,201 - -0.1

Or see this region's nucleotide sequence