Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07790

Experiment: L-Serine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Serine
1,783,015	+		HSERO_RS07780	0.89	-0.6
1,783,017	+		HSERO_RS07780	0.90	+0.7
1,783,023	+				-0.2
1,783,023	-				+0.2
1,783,049	-				-0.2
1,783,058	+				-0.3
1,783,249	-				+0.3
1,783,284	-				+0.6
1,783,284	-				+0.1
1,783,284	-				-0.7
1,783,335	-				+0.7
1,783,351	-				-1.0
1,783,351	-				-0.2
1,783,351	-				-0.2
1,783,387	-				-0.2
1,783,387	-				-0.1
1,783,421	+				-0.0
1,783,428	+				+0.1
1,783,435	-				-1.4
1,783,441	-				-0.4
1,783,481	+				-0.1
1,783,481	+				-0.1
1,783,489	-				-0.9
1,783,489	-				-0.0
1,783,494	+				+0.1
1,783,501	+				-0.0
1,783,523	-				-0.0
1,783,527	+				-0.1
1,783,527	+				+0.5
1,783,527	+				+0.1
1,783,527	+				+0.3
1,783,527	+				-0.2
1,783,527	+				-0.7
1,783,527	+				-0.6
1,783,527	+				-0.3
1,783,527	+				-0.1
1,783,528	+				+0.2
1,783,528	+				-0.3
1,783,528	+				+1.2
1,783,535	-				-0.3
1,783,535	-				+0.6
1,783,535	-				-0.3
1,783,535	-				-0.7
1,783,535	-				-0.6
1,783,535	-				-0.4
1,783,535	-				-0.2
1,783,535	-				-1.2
1,783,535	-				-1.1
1,783,536	-				-0.2
1,783,536	-				+0.3
1,783,536	-				-0.6
1,783,537	+				+0.2
1,783,538	-				+0.3
1,783,538	-				+0.2
1,783,538	-				+1.0
1,783,545	-				-0.6
1,783,546	-				+0.2
1,783,552	-				+0.0
1,783,557	-				-0.9
1,783,557	-				+0.2
1,783,569	-				-1.1
1,783,569	-				+0.1
1,783,616	+		HSERO_RS07785	0.18	-0.2
1,783,616	-		HSERO_RS07785	0.18	+0.2
1,783,623	-		HSERO_RS07785	0.21	-0.4
1,783,623	-		HSERO_RS07785	0.21	+0.3
1,783,627	+		HSERO_RS07785	0.23	-0.3
1,783,627	+		HSERO_RS07785	0.23	+0.2
1,783,627	+		HSERO_RS07785	0.23	-0.3
1,783,627	+		HSERO_RS07785	0.23	-0.2
1,783,627	+				+0.4
1,783,627	+		HSERO_RS07785	0.23	+1.0
1,783,627	+		HSERO_RS07785	0.23	-0.0
1,783,627	+		HSERO_RS07785	0.23	-0.5
1,783,627	+		HSERO_RS07785	0.23	-1.2
1,783,627	+		HSERO_RS07785	0.23	+2.0
1,783,627	+		HSERO_RS07785	0.23	+0.2
1,783,627	+		HSERO_RS07785	0.23	+0.4
1,783,627	+		HSERO_RS07785	0.23	-0.0
1,783,627	+		HSERO_RS07785	0.23	-0.6
1,783,627	+		HSERO_RS07785	0.23	+0.4
1,783,627	+		HSERO_RS07785	0.23	-0.7
1,783,627	+		HSERO_RS07785	0.23	-0.5
1,783,627	+		HSERO_RS07785	0.23	-0.1
1,783,627	+		HSERO_RS07785	0.23	+1.6
1,783,627	+		HSERO_RS07785	0.23	-1.6
1,783,627	+		HSERO_RS07785	0.23	+0.0
1,783,627	+		HSERO_RS07785	0.23	-0.5
1,783,627	+		HSERO_RS07785	0.23	+0.0
1,783,627	+		HSERO_RS07785	0.23	-1.5
1,783,627	+		HSERO_RS07785	0.23	-0.8
1,783,627	+		HSERO_RS07785	0.23	-0.1
1,783,627	+		HSERO_RS07785	0.23	+0.0
1,783,627	+		HSERO_RS07785	0.23	-0.1
1,783,627	+		HSERO_RS07785	0.23	-0.5
1,783,627	+		HSERO_RS07785	0.23	-0.1
1,783,635	-		HSERO_RS07785	0.26	-0.1
1,783,635	-		HSERO_RS07785	0.26	-0.1
1,783,635	-		HSERO_RS07785	0.26	+0.6
1,783,635	-		HSERO_RS07785	0.26	+0.4
1,783,635	-		HSERO_RS07785	0.26	+0.2
1,783,635	-		HSERO_RS07785	0.26	+0.2
1,783,635	-		HSERO_RS07785	0.26	-0.2
1,783,635	-		HSERO_RS07785	0.26	-0.2
1,783,635	-		HSERO_RS07785	0.26	-0.2
1,783,635	-		HSERO_RS07785	0.26	-0.2
1,783,635	-		HSERO_RS07785	0.26	+0.2
1,783,635	-		HSERO_RS07785	0.26	-0.2
1,783,635	-		HSERO_RS07785	0.26	-0.1
1,783,635	-		HSERO_RS07785	0.26	-1.5
1,783,635	-		HSERO_RS07785	0.26	-0.5
1,783,635	-		HSERO_RS07785	0.26	-0.8
1,783,635	-		HSERO_RS07785	0.26	-0.6
1,783,635	-		HSERO_RS07785	0.26	+0.3
1,783,635	-		HSERO_RS07785	0.26	+0.7
1,783,635	-		HSERO_RS07785	0.26	+0.8
1,783,635	-		HSERO_RS07785	0.26	+0.1
1,783,635	-		HSERO_RS07785	0.26	+1.1
1,783,662	+		HSERO_RS07785	0.37	+0.2
1,783,685	-		HSERO_RS07785	0.46	+0.2
1,783,700	-		HSERO_RS07785	0.52	-0.5
1,783,713	+		HSERO_RS07785	0.58	-1.6
1,783,739	+		HSERO_RS07785	0.68	-1.8
1,783,739	+		HSERO_RS07785	0.68	-0.6
1,783,739	+		HSERO_RS07785	0.68	-0.2
1,783,739	+		HSERO_RS07785	0.68	+0.2
1,783,739	+				+1.7
1,783,739	+		HSERO_RS07785	0.68	-0.7
1,783,739	+		HSERO_RS07785	0.68	-0.6
1,783,739	+		HSERO_RS07785	0.68	-0.5
1,783,739	+		HSERO_RS07785	0.68	-0.4
1,783,739	+		HSERO_RS07785	0.68	-0.5
1,783,739	+		HSERO_RS07785	0.68	-0.6
1,783,739	+		HSERO_RS07785	0.68	+0.2
1,783,739	+				-0.6
1,783,739	+		HSERO_RS07785	0.68	-0.7
1,783,739	+		HSERO_RS07785	0.68	+0.2
1,783,739	+		HSERO_RS07785	0.68	-0.4
1,783,739	+		HSERO_RS07785	0.68	+0.4
1,783,739	+		HSERO_RS07785	0.68	+0.2
1,783,747	-		HSERO_RS07785	0.72	-0.0
1,783,747	-		HSERO_RS07785	0.72	+0.2
1,783,747	-				-0.0
1,783,747	-		HSERO_RS07785	0.72	-0.4
1,783,747	-		HSERO_RS07785	0.72	+0.8
1,783,747	-		HSERO_RS07785	0.72	-0.2
1,783,747	-		HSERO_RS07785	0.72	+0.1
1,783,747	-		HSERO_RS07785	0.72	-0.5
1,783,747	-		HSERO_RS07785	0.72	+0.3
1,783,748	-		HSERO_RS07785	0.72	+0.2
1,783,773	+		HSERO_RS07785	0.82	+0.4
1,783,778	+		HSERO_RS07785	0.84	+0.4
1,783,779	+		HSERO_RS07785	0.85	-1.0
1,783,783	+		HSERO_RS07785	0.86	-0.2
1,783,783	+		HSERO_RS07785	0.86	-0.6
1,783,783	+		HSERO_RS07785	0.86	-0.5
1,783,783	+				-1.7
1,783,783	+		HSERO_RS07785	0.86	+0.1
1,783,783	+		HSERO_RS07785	0.86	+0.6
1,783,783	+		HSERO_RS07785	0.86	-0.2
1,783,783	+		HSERO_RS07785	0.86	+0.4
1,783,783	+		HSERO_RS07785	0.86	-0.5
1,783,783	+		HSERO_RS07785	0.86	-0.3
1,783,783	+		HSERO_RS07785	0.86	-0.1
1,783,783	+		HSERO_RS07785	0.86	-0.1
1,783,783	+				+1.4
1,783,783	+		HSERO_RS07785	0.86	-0.1
1,783,783	+		HSERO_RS07785	0.86	-0.0
1,783,783	+		HSERO_RS07785	0.86	-0.1
1,783,783	+		HSERO_RS07785	0.86	-0.0
1,783,783	+		HSERO_RS07785	0.86	+0.2
1,783,783	+		HSERO_RS07785	0.86	-0.1
1,783,783	+		HSERO_RS07785	0.86	-0.2
1,783,783	+		HSERO_RS07785	0.86	-0.5
1,783,783	+		HSERO_RS07785	0.86	+0.2
1,783,783	+		HSERO_RS07785	0.86	-0.4
1,783,783	+		HSERO_RS07785	0.86	-0.4
1,783,783	+		HSERO_RS07785	0.86	-0.7
1,783,783	+				+1.2
1,783,783	+		HSERO_RS07785	0.86	-0.2
1,783,783	+		HSERO_RS07785	0.86	-1.0
1,783,783	+		HSERO_RS07785	0.86	-0.3
1,783,783	+		HSERO_RS07785	0.86	-0.2
1,783,783	+		HSERO_RS07785	0.86	+1.1
1,783,783	+		HSERO_RS07785	0.86	+0.2
1,783,783	+		HSERO_RS07785	0.86	-0.8
1,783,783	+		HSERO_RS07785	0.86	-0.3
1,783,783	+		HSERO_RS07785	0.86	+0.1
1,783,783	+		HSERO_RS07785	0.86	-0.3
1,783,783	+		HSERO_RS07785	0.86	-0.1
1,783,783	+		HSERO_RS07785	0.86	-0.8
1,783,783	+		HSERO_RS07785	0.86	-1.2
1,783,783	+		HSERO_RS07785	0.86	-0.5
1,783,783	+		HSERO_RS07785	0.86	+0.3
1,783,783	+		HSERO_RS07785	0.86	-0.6
1,783,783	+		HSERO_RS07785	0.86	+2.0
1,783,786	-		HSERO_RS07785	0.87	-0.3
1,783,786	-		HSERO_RS07785	0.87	+0.5
1,783,786	-		HSERO_RS07785	0.87	-0.3
1,783,787	-		HSERO_RS07785	0.88	+0.3
1,783,787	-		HSERO_RS07785	0.88	-0.5
1,783,788	+		HSERO_RS07785	0.88	+0.2
1,783,791	-		HSERO_RS07785	0.89	-0.4
1,783,791	-		HSERO_RS07785	0.89	+0.7
1,783,791	-		HSERO_RS07785	0.89	-0.1
1,783,791	-		HSERO_RS07785	0.89	-0.2
1,783,791	-		HSERO_RS07785	0.89	-0.4
1,783,791	-		HSERO_RS07785	0.89	-0.1
1,783,791	-		HSERO_RS07785	0.89	+0.1
1,783,791	-		HSERO_RS07785	0.89	+0.1
1,783,791	-		HSERO_RS07785	0.89	-0.2
1,783,791	-		HSERO_RS07785	0.89	-0.3
1,783,791	-		HSERO_RS07785	0.89	-0.1
1,783,791	-		HSERO_RS07785	0.89	-0.0
1,783,791	-		HSERO_RS07785	0.89	-0.6
1,783,791	-		HSERO_RS07785	0.89	-0.3
1,783,791	-		HSERO_RS07785	0.89	+0.7
1,783,791	-		HSERO_RS07785	0.89	+0.6
1,783,791	-		HSERO_RS07785	0.89	-0.1
1,783,791	-		HSERO_RS07785	0.89	-0.1
1,783,791	-		HSERO_RS07785	0.89	-0.4
1,783,791	-		HSERO_RS07785	0.89	-0.1
1,783,791	-		HSERO_RS07785	0.89	-0.3
1,783,791	-				+1.5
1,783,791	-		HSERO_RS07785	0.89	-1.7
1,783,791	-		HSERO_RS07785	0.89	+0.4
1,783,791	-		HSERO_RS07785	0.89	+0.5
1,783,791	-		HSERO_RS07785	0.89	+0.0
1,783,791	-		HSERO_RS07785	0.89	+0.3
1,783,791	-		HSERO_RS07785	0.89	+0.1
1,783,791	-		HSERO_RS07785	0.89	-0.2
1,783,791	-		HSERO_RS07785	0.89	-0.3
1,783,791	-		HSERO_RS07785	0.89	+0.1
1,783,791	-		HSERO_RS07785	0.89	+0.2
1,783,791	-		HSERO_RS07785	0.89	+0.3
1,783,791	-		HSERO_RS07785	0.89	+0.1
1,783,791	-		HSERO_RS07785	0.89	+0.5
1,783,791	-		HSERO_RS07785	0.89	+0.4
1,783,791	-		HSERO_RS07785	0.89	+0.1
1,783,791	-		HSERO_RS07785	0.89	+0.1
1,783,791	-		HSERO_RS07785	0.89	-0.7
1,783,791	-		HSERO_RS07785	0.89	+0.2
1,783,793	+				+0.4
1,783,796	-				+0.1
1,783,796	-				+0.9
1,783,796	-				-0.3
1,783,800	-				-0.2
1,783,801	-				-0.1
1,783,801	-				-0.6
1,783,801	-				+0.4
1,783,853	+				-0.6
1,783,860	+				+0.1
1,783,861	-				+0.0
1,783,861	-				-0.1
1,783,861	-				-0.2
1,783,890	+				-1.1
1,783,890	+				-0.7
1,783,890	+				-0.3
1,783,890	+				+0.1
1,783,898	+				+0.4
1,783,898	+				+0.3
1,783,898	-				+0.3
1,783,898	-				+0.7
1,783,906	-				+0.1
1,783,906	-				-0.0
1,783,906	-				+0.1
1,783,906	-				-1.6
1,783,954	-				-0.8
1,783,958	+				-0.2
1,783,958	+				-0.0
1,783,958	+				+0.2
1,783,958	+				-0.2
1,783,958	+				-2.3
1,783,958	+				+0.3
1,783,958	+				+0.9
1,783,958	+				+1.5
1,783,958	+				-1.0
1,783,959	+				+1.1
1,783,959	+				-0.3
1,783,966	-				-0.4
1,783,966	-				-0.1
1,783,966	-				-0.0
1,783,966	-				-0.7
1,783,966	-				-0.2
1,783,966	-				+0.0
1,783,966	-				-0.8
1,783,966	-				+0.5
1,783,966	-				-0.0
1,783,966	-				+0.3
1,783,997	+				+0.0
1,783,997	+				-0.6
1,784,016	+				-0.2
1,784,016	+				-0.3
1,784,016	+				+0.4
1,784,060	+		HSERO_RS07790	0.16	+0.2
1,784,081	-		HSERO_RS07790	0.22	-0.1
1,784,082	-		HSERO_RS07790	0.22	-0.1
1,784,175	+		HSERO_RS07790	0.49	+1.2
1,784,183	-		HSERO_RS07790	0.51	+1.0
1,784,232	-		HSERO_RS07790	0.66	-0.4
1,784,339	+				-0.8
1,784,389	+				-0.7
1,784,400	-		HSERO_RS07795	0.12	+0.4
1,784,522	+		HSERO_RS07795	0.41	+0.6
1,784,819	+		HSERO_RS07800	0.11	-0.2
1,785,012	+				-0.6
1,785,102	+		HSERO_RS07800	0.76	-0.2
1,785,115	-		HSERO_RS07800	0.79	+1.6