Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS06560 and HSERO_RS06565 overlap by 4 nucleotides HSERO_RS06565 and HSERO_RS06570 are separated by 38 nucleotides HSERO_RS06570 and HSERO_RS06575 are separated by 75 nucleotides
HSERO_RS06560: HSERO_RS06560 - NADH oxidase, at 1,492,297 to 1,493,352
_RS06560
HSERO_RS06565: HSERO_RS06565 - 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase, at 1,493,349 to 1,494,137
_RS06565
HSERO_RS06570: HSERO_RS06570 - endoribonuclease L-PSP, at 1,494,176 to 1,494,592
_RS06570
HSERO_RS06575: HSERO_RS06575 - major facilitator transporter, at 1,494,668 to 1,496,035
_RS06575
Position (kb) 1494
1495 Strain fitness (log2 ratio) -1
0
1 at 1493.249 kb on - strand at 1493.446 kb on - strand, within HSERO_RS06565 at 1493.527 kb on + strand, within HSERO_RS06565 at 1493.666 kb on - strand, within HSERO_RS06565 at 1493.746 kb on + strand, within HSERO_RS06565 at 1493.956 kb on + strand, within HSERO_RS06565 at 1494.140 kb on - strand at 1494.511 kb on + strand, within HSERO_RS06570 at 1494.536 kb on - strand, within HSERO_RS06570 at 1494.734 kb on - strand at 1494.768 kb on + strand at 1494.863 kb on - strand, within HSERO_RS06575 at 1494.873 kb on - strand, within HSERO_RS06575 at 1494.942 kb on + strand, within HSERO_RS06575 at 1494.942 kb on + strand, within HSERO_RS06575 at 1495.056 kb on - strand, within HSERO_RS06575 at 1495.098 kb on + strand, within HSERO_RS06575 at 1495.145 kb on - strand, within HSERO_RS06575 at 1495.266 kb on + strand, within HSERO_RS06575 at 1495.287 kb on + strand, within HSERO_RS06575 at 1495.287 kb on + strand, within HSERO_RS06575 at 1495.297 kb on + strand at 1495.307 kb on - strand, within HSERO_RS06575 at 1495.400 kb on - strand, within HSERO_RS06575 at 1495.402 kb on + strand, within HSERO_RS06575
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 1,493,249 - -0.3 1,493,446 - HSERO_RS06565 0.12 +0.1 1,493,527 + HSERO_RS06565 0.23 -0.4 1,493,666 - HSERO_RS06565 0.40 -0.2 1,493,746 + HSERO_RS06565 0.50 +0.2 1,493,956 + HSERO_RS06565 0.77 -0.1 1,494,140 - +0.3 1,494,511 + HSERO_RS06570 0.80 +0.9 1,494,536 - HSERO_RS06570 0.86 +0.1 1,494,734 - -0.5 1,494,768 + -0.5 1,494,863 - HSERO_RS06575 0.14 -0.9 1,494,873 - HSERO_RS06575 0.15 -0.4 1,494,942 + HSERO_RS06575 0.20 -0.8 1,494,942 + HSERO_RS06575 0.20 +0.1 1,495,056 - HSERO_RS06575 0.28 +0.1 1,495,098 + HSERO_RS06575 0.31 +0.9 1,495,145 - HSERO_RS06575 0.35 -0.1 1,495,266 + HSERO_RS06575 0.44 -0.4 1,495,287 + HSERO_RS06575 0.45 -0.7 1,495,287 + HSERO_RS06575 0.45 +0.4 1,495,297 + -0.0 1,495,307 - HSERO_RS06575 0.47 -0.3 1,495,400 - HSERO_RS06575 0.54 -0.1 1,495,402 + HSERO_RS06575 0.54 -1.4
Or see this region's nucleotide sequence