Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04530 and HSERO_RS04535 are separated by 40 nucleotides HSERO_RS04535 and HSERO_RS04540 overlap by 1 nucleotides HSERO_RS04540 and HSERO_RS04545 are separated by 87 nucleotides HSERO_RS04545 and HSERO_RS04550 overlap by 1 nucleotides
HSERO_RS04530: HSERO_RS04530 - hypothetical protein, at 991,775 to 992,149
_RS04530
HSERO_RS04535: HSERO_RS04535 - tail protein X, at 992,190 to 992,399
_RS04535
HSERO_RS04540: HSERO_RS04540 - head protein, at 992,399 to 992,890
_RS04540
HSERO_RS04545: HSERO_RS04545 - integrase, at 992,978 to 993,697
_RS04545
HSERO_RS04550: HSERO_RS04550 - capsid protein, at 993,697 to 994,740
_RS04550
Position (kb) 992
993
994 Strain fitness (log2 ratio) -1
0
1 at 992.052 kb on + strand, within HSERO_RS04530 at 992.099 kb on - strand, within HSERO_RS04530 at 992.201 kb on + strand at 992.296 kb on + strand, within HSERO_RS04535 at 992.314 kb on - strand, within HSERO_RS04535 at 992.492 kb on - strand, within HSERO_RS04540 at 992.516 kb on - strand, within HSERO_RS04540 at 992.576 kb on + strand, within HSERO_RS04540 at 992.576 kb on + strand, within HSERO_RS04540 at 992.611 kb on + strand, within HSERO_RS04540 at 992.652 kb on - strand, within HSERO_RS04540 at 992.765 kb on - strand, within HSERO_RS04540 at 992.866 kb on + strand at 993.129 kb on + strand, within HSERO_RS04545 at 993.554 kb on - strand, within HSERO_RS04545 at 993.909 kb on - strand, within HSERO_RS04550 at 994.402 kb on + strand, within HSERO_RS04550 at 994.500 kb on + strand, within HSERO_RS04550
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 992,052 + HSERO_RS04530 0.74 -0.1 992,099 - HSERO_RS04530 0.86 -0.3 992,201 + +0.1 992,296 + HSERO_RS04535 0.50 +0.2 992,314 - HSERO_RS04535 0.59 -0.2 992,492 - HSERO_RS04540 0.19 -0.5 992,516 - HSERO_RS04540 0.24 +0.3 992,576 + HSERO_RS04540 0.36 -0.2 992,576 + HSERO_RS04540 0.36 -0.5 992,611 + HSERO_RS04540 0.43 +0.1 992,652 - HSERO_RS04540 0.51 -0.5 992,765 - HSERO_RS04540 0.74 -0.2 992,866 + -0.6 993,129 + HSERO_RS04545 0.21 +0.3 993,554 - HSERO_RS04545 0.80 +1.2 993,909 - HSERO_RS04550 0.20 +0.0 994,402 + HSERO_RS04550 0.68 -0.5 994,500 + HSERO_RS04550 0.77 -0.3
Or see this region's nucleotide sequence