Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04170

Experiment: L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS04170 and HSERO_RS04175 are separated by 399 nucleotides HSERO_RS04170: HSERO_RS04170 - hypothetical protein, at 913,852 to 914,304 _RS04170 HSERO_RS04175: HSERO_RS04175 - hypothetical protein, at 914,704 to 915,072 _RS04175 Position (kb) 913 914 915Strain fitness (log2 ratio) -1 0 1at 913.244 kb on + strandat 913.252 kb on - strandat 913.343 kb on - strandat 913.348 kb on - strandat 913.356 kb on + strandat 913.388 kb on + strandat 913.396 kb on - strandat 913.601 kb on + strandat 913.613 kb on + strandat 913.672 kb on - strandat 914.062 kb on + strand, within HSERO_RS04170at 914.288 kb on - strandat 914.467 kb on - strandat 914.665 kb on + strandat 914.680 kb on + strandat 914.789 kb on + strand, within HSERO_RS04175at 914.956 kb on - strand, within HSERO_RS04175at 914.974 kb on - strand, within HSERO_RS04175at 914.980 kb on + strand, within HSERO_RS04175at 915.033 kb on + strand, within HSERO_RS04175at 915.033 kb on + strand, within HSERO_RS04175at 915.041 kb on - strandat 915.084 kb on - strandat 915.194 kb on + strandat 915.204 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine
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913,244 + -0.7
913,252 - -0.1
913,343 - -0.1
913,348 - +0.5
913,356 + +0.5
913,388 + +0.1
913,396 - -0.0
913,601 + +0.1
913,613 + -0.3
913,672 - +0.1
914,062 + HSERO_RS04170 0.46 +0.5
914,288 - +0.2
914,467 - -0.5
914,665 + -0.2
914,680 + +0.2
914,789 + HSERO_RS04175 0.23 +1.1
914,956 - HSERO_RS04175 0.68 +0.0
914,974 - HSERO_RS04175 0.73 -0.2
914,980 + HSERO_RS04175 0.75 +0.2
915,033 + HSERO_RS04175 0.89 +0.7
915,033 + HSERO_RS04175 0.89 +0.1
915,041 - -0.1
915,084 - +1.5
915,194 + -0.1
915,204 + +0.8

Or see this region's nucleotide sequence