Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03615 and HSERO_RS03620 are separated by 237 nucleotides HSERO_RS03620 and HSERO_RS03625 are separated by 94 nucleotides
HSERO_RS03615: HSERO_RS03615 - (dimethylallyl)adenosine tRNA methylthiotransferase, at 789,224 to 790,564
_RS03615
HSERO_RS03620: HSERO_RS03620 - LysR family transcriptional regulator, at 790,802 to 791,719
_RS03620
HSERO_RS03625: HSERO_RS03625 - nicotinamidase-like protein, at 791,814 to 792,422
_RS03625
Position (kb) 790
791
792 Strain fitness (log2 ratio) -1
0
1
2 at 790.203 kb on + strand, within HSERO_RS03615 at 790.208 kb on - strand, within HSERO_RS03615 at 790.461 kb on + strand at 790.461 kb on + strand at 790.461 kb on + strand at 790.829 kb on - strand at 790.859 kb on + strand at 791.086 kb on + strand, within HSERO_RS03620 at 791.166 kb on - strand at 791.183 kb on - strand, within HSERO_RS03620 at 791.328 kb on + strand, within HSERO_RS03620 at 791.472 kb on - strand, within HSERO_RS03620 at 791.818 kb on + strand at 791.823 kb on + strand at 791.831 kb on - strand at 791.831 kb on - strand at 791.939 kb on - strand, within HSERO_RS03625 at 792.016 kb on - strand, within HSERO_RS03625 at 792.159 kb on - strand, within HSERO_RS03625 at 792.218 kb on - strand, within HSERO_RS03625 at 792.251 kb on - strand, within HSERO_RS03625 at 792.337 kb on + strand, within HSERO_RS03625 at 792.403 kb on - strand at 792.415 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 790,203 + HSERO_RS03615 0.73 -0.3 790,208 - HSERO_RS03615 0.73 -0.2 790,461 + -0.3 790,461 + +0.0 790,461 + +0.2 790,829 - +0.0 790,859 + +0.6 791,086 + HSERO_RS03620 0.31 +0.9 791,166 - +0.7 791,183 - HSERO_RS03620 0.42 +0.1 791,328 + HSERO_RS03620 0.57 +0.1 791,472 - HSERO_RS03620 0.73 +0.7 791,818 + -0.1 791,823 + -0.1 791,831 - -0.6 791,831 - +2.3 791,939 - HSERO_RS03625 0.21 -0.2 792,016 - HSERO_RS03625 0.33 -0.0 792,159 - HSERO_RS03625 0.57 -0.1 792,218 - HSERO_RS03625 0.66 -0.5 792,251 - HSERO_RS03625 0.72 -1.1 792,337 + HSERO_RS03625 0.86 +0.1 792,403 - -0.5 792,415 - -1.0
Or see this region's nucleotide sequence