Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03590 and HSERO_RS03595 are separated by 23 nucleotides HSERO_RS03595 and HSERO_RS03600 are separated by 377 nucleotides
HSERO_RS03590: HSERO_RS03590 - apolipoprotein N-acyltransferase, at 782,859 to 784,484
_RS03590
HSERO_RS03595: HSERO_RS03595 - cation transporter, at 784,508 to 785,386
_RS03595
HSERO_RS03600: HSERO_RS03600 - chemotaxis protein, at 785,764 to 787,308
_RS03600
Position (kb) 784
785
786 Strain fitness (log2 ratio) -1
0
1
2 at 784.707 kb on + strand, within HSERO_RS03595 at 784.777 kb on - strand, within HSERO_RS03595 at 785.001 kb on - strand, within HSERO_RS03595 at 785.148 kb on - strand, within HSERO_RS03595 at 785.333 kb on - strand at 785.419 kb on - strand at 785.560 kb on + strand at 785.588 kb on - strand at 785.662 kb on + strand at 785.674 kb on + strand at 785.691 kb on - strand at 785.783 kb on + strand at 785.793 kb on + strand at 785.901 kb on + strand at 785.901 kb on + strand at 785.909 kb on - strand at 785.909 kb on - strand at 785.990 kb on - strand, within HSERO_RS03600 at 786.091 kb on - strand, within HSERO_RS03600 at 786.108 kb on + strand, within HSERO_RS03600 at 786.258 kb on + strand, within HSERO_RS03600 at 786.293 kb on - strand, within HSERO_RS03600 at 786.295 kb on + strand, within HSERO_RS03600 at 786.382 kb on - strand, within HSERO_RS03600
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 784,707 + HSERO_RS03595 0.23 -0.4 784,777 - HSERO_RS03595 0.31 +0.9 785,001 - HSERO_RS03595 0.56 +0.2 785,148 - HSERO_RS03595 0.73 +1.9 785,333 - +1.3 785,419 - -1.1 785,560 + +0.2 785,588 - -0.0 785,662 + +0.4 785,674 + -0.3 785,691 - -0.4 785,783 + -0.5 785,793 + +0.9 785,901 + +0.8 785,901 + -0.6 785,909 - +0.7 785,909 - -0.3 785,990 - HSERO_RS03600 0.15 +0.2 786,091 - HSERO_RS03600 0.21 -0.4 786,108 + HSERO_RS03600 0.22 -0.3 786,258 + HSERO_RS03600 0.32 -1.1 786,293 - HSERO_RS03600 0.34 -0.2 786,295 + HSERO_RS03600 0.34 -0.7 786,382 - HSERO_RS03600 0.40 -0.1
Or see this region's nucleotide sequence