Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS03475

Experiment: L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS03470 and HSERO_RS03475 are separated by 39 nucleotidesHSERO_RS03475 and HSERO_RS03480 are separated by 164 nucleotides HSERO_RS03470: HSERO_RS03470 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, at 755,883 to 756,989 _RS03470 HSERO_RS03475: HSERO_RS03475 - NUDIX hydrolase, at 757,029 to 757,526 _RS03475 HSERO_RS03480: HSERO_RS03480 - NAD(P) transhydrogenase subunit alpha, at 757,691 to 758,806 _RS03480 Position (kb) 757 758Strain fitness (log2 ratio) -1 0 1at 757.138 kb on - strand, within HSERO_RS03475at 757.182 kb on + strand, within HSERO_RS03475at 757.204 kb on + strand, within HSERO_RS03475at 757.399 kb on + strand, within HSERO_RS03475at 758.173 kb on + strand, within HSERO_RS03480at 758.219 kb on + strand, within HSERO_RS03480at 758.361 kb on + strand, within HSERO_RS03480at 758.403 kb on + strand, within HSERO_RS03480at 758.490 kb on + strand, within HSERO_RS03480

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine
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757,138 - HSERO_RS03475 0.22 +0.4
757,182 + HSERO_RS03475 0.31 +0.9
757,204 + HSERO_RS03475 0.35 +0.2
757,399 + HSERO_RS03475 0.74 +0.5
758,173 + HSERO_RS03480 0.43 -1.0
758,219 + HSERO_RS03480 0.47 -0.1
758,361 + HSERO_RS03480 0.60 -0.2
758,403 + HSERO_RS03480 0.64 -1.5
758,490 + HSERO_RS03480 0.72 +0.2

Or see this region's nucleotide sequence