Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03305 and HSERO_RS03310 are separated by 17 nucleotides HSERO_RS03310 and HSERO_RS03315 overlap by 8 nucleotides
HSERO_RS03305: HSERO_RS03305 - peptidase M48, at 726,848 to 728,404
_RS03305
HSERO_RS03310: HSERO_RS03310 - hypothetical protein, at 728,422 to 729,030
_RS03310
HSERO_RS03315: HSERO_RS03315 - alpha/beta hydrolase, at 729,023 to 730,015
_RS03315
Position (kb) 728
729
730 Strain fitness (log2 ratio) -1
0
1 at 727.428 kb on - strand, within HSERO_RS03305 at 727.557 kb on + strand, within HSERO_RS03305 at 727.662 kb on - strand, within HSERO_RS03305 at 727.740 kb on - strand, within HSERO_RS03305 at 727.771 kb on - strand, within HSERO_RS03305 at 728.191 kb on - strand, within HSERO_RS03305 at 728.498 kb on + strand, within HSERO_RS03310 at 728.504 kb on + strand, within HSERO_RS03310 at 728.717 kb on - strand, within HSERO_RS03310 at 728.727 kb on - strand, within HSERO_RS03310 at 728.936 kb on - strand, within HSERO_RS03310 at 728.970 kb on + strand at 728.978 kb on - strand at 729.256 kb on + strand, within HSERO_RS03315 at 729.323 kb on + strand, within HSERO_RS03315 at 729.331 kb on - strand, within HSERO_RS03315 at 729.399 kb on + strand, within HSERO_RS03315 at 729.459 kb on + strand, within HSERO_RS03315 at 729.478 kb on - strand, within HSERO_RS03315 at 729.482 kb on + strand, within HSERO_RS03315 at 729.482 kb on + strand, within HSERO_RS03315 at 729.645 kb on - strand, within HSERO_RS03315 at 729.942 kb on - strand at 729.969 kb on + strand at 730.012 kb on + strand at 730.030 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 727,428 - HSERO_RS03305 0.37 -0.1 727,557 + HSERO_RS03305 0.46 -0.1 727,662 - HSERO_RS03305 0.52 +0.4 727,740 - HSERO_RS03305 0.57 +0.0 727,771 - HSERO_RS03305 0.59 +0.2 728,191 - HSERO_RS03305 0.86 -0.6 728,498 + HSERO_RS03310 0.12 +0.1 728,504 + HSERO_RS03310 0.13 -0.4 728,717 - HSERO_RS03310 0.48 -0.1 728,727 - HSERO_RS03310 0.50 +1.7 728,936 - HSERO_RS03310 0.84 +1.4 728,970 + -0.6 728,978 - -0.1 729,256 + HSERO_RS03315 0.23 -0.2 729,323 + HSERO_RS03315 0.30 -0.1 729,331 - HSERO_RS03315 0.31 -0.1 729,399 + HSERO_RS03315 0.38 +0.1 729,459 + HSERO_RS03315 0.44 -0.3 729,478 - HSERO_RS03315 0.46 -0.3 729,482 + HSERO_RS03315 0.46 -0.1 729,482 + HSERO_RS03315 0.46 +0.6 729,645 - HSERO_RS03315 0.63 -0.2 729,942 - +1.0 729,969 + -0.2 730,012 + +0.3 730,030 - +0.0
Or see this region's nucleotide sequence