Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03290 and HSERO_RS03295 are separated by 183 nucleotides HSERO_RS03295 and HSERO_RS03300 are separated by 64 nucleotides HSERO_RS03300 and HSERO_RS03305 are separated by 107 nucleotides
HSERO_RS03290: HSERO_RS03290 - membrane protein, at 724,754 to 725,479
_RS03290
HSERO_RS03295: HSERO_RS03295 - type IV pilin, at 725,663 to 726,169
_RS03295
HSERO_RS03300: HSERO_RS03300 - molybdenum cofactor biosynthesis protein MoaC, at 726,234 to 726,740
_RS03300
HSERO_RS03305: HSERO_RS03305 - peptidase M48, at 726,848 to 728,404
_RS03305
Position (kb) 726
727 Strain fitness (log2 ratio) -1
0
1 at 725.429 kb on + strand at 725.578 kb on + strand at 725.578 kb on + strand at 725.704 kb on - strand at 725.724 kb on - strand, within HSERO_RS03295 at 725.805 kb on + strand, within HSERO_RS03295 at 725.813 kb on - strand, within HSERO_RS03295 at 726.111 kb on - strand, within HSERO_RS03295 at 726.174 kb on + strand at 726.182 kb on - strand at 726.491 kb on + strand, within HSERO_RS03300 at 726.504 kb on - strand, within HSERO_RS03300 at 726.736 kb on + strand at 726.921 kb on + strand at 727.208 kb on + strand, within HSERO_RS03305 at 727.214 kb on - strand, within HSERO_RS03305 at 727.221 kb on + strand, within HSERO_RS03305 at 727.268 kb on - strand, within HSERO_RS03305 at 727.279 kb on + strand, within HSERO_RS03305 at 727.372 kb on - strand, within HSERO_RS03305 at 727.428 kb on - strand, within HSERO_RS03305 at 727.557 kb on + strand, within HSERO_RS03305 at 727.662 kb on - strand, within HSERO_RS03305 at 727.740 kb on - strand, within HSERO_RS03305
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 725,429 + -0.3 725,578 + -0.3 725,578 + -0.6 725,704 - -0.6 725,724 - HSERO_RS03295 0.12 +0.7 725,805 + HSERO_RS03295 0.28 +0.0 725,813 - HSERO_RS03295 0.30 +0.5 726,111 - HSERO_RS03295 0.88 -0.7 726,174 + -0.4 726,182 - -0.5 726,491 + HSERO_RS03300 0.51 +0.1 726,504 - HSERO_RS03300 0.53 +1.3 726,736 + +0.8 726,921 + +0.3 727,208 + HSERO_RS03305 0.23 +0.1 727,214 - HSERO_RS03305 0.24 -0.1 727,221 + HSERO_RS03305 0.24 -0.2 727,268 - HSERO_RS03305 0.27 +0.3 727,279 + HSERO_RS03305 0.28 -1.2 727,372 - HSERO_RS03305 0.34 +0.0 727,428 - HSERO_RS03305 0.37 -0.1 727,557 + HSERO_RS03305 0.46 -0.1 727,662 - HSERO_RS03305 0.52 +0.4 727,740 - HSERO_RS03305 0.57 +0.0
Or see this region's nucleotide sequence