Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02755 and HSERO_RS02760 are separated by 65 nucleotides HSERO_RS02760 and HSERO_RS02765 are separated by 129 nucleotides HSERO_RS02765 and HSERO_RS02770 are separated by 430 nucleotides HSERO_RS02770 and HSERO_RS02775 are separated by 255 nucleotides
HSERO_RS02755: HSERO_RS02755 - hypothetical protein, at 610,532 to 611,089
_RS02755
HSERO_RS02760: HSERO_RS02760 - hypothetical protein, at 611,155 to 611,646
_RS02760
HSERO_RS02765: HSERO_RS02765 - general stress protein, at 611,776 to 611,985
_RS02765
HSERO_RS02770: HSERO_RS02770 - hypothetical protein, at 612,416 to 612,664
_RS02770
HSERO_RS02775: HSERO_RS02775 - hypothetical protein, at 612,920 to 613,150
_RS02775
Position (kb) 611
612 Strain fitness (log2 ratio) -1
0
1 at 610.806 kb on - strand, within HSERO_RS02755 at 610.806 kb on - strand, within HSERO_RS02755 at 610.889 kb on - strand, within HSERO_RS02755 at 610.932 kb on + strand, within HSERO_RS02755 at 610.932 kb on + strand, within HSERO_RS02755 at 611.019 kb on + strand, within HSERO_RS02755 at 611.268 kb on - strand, within HSERO_RS02760 at 611.524 kb on + strand, within HSERO_RS02760 at 611.615 kb on - strand at 611.802 kb on - strand, within HSERO_RS02765 at 612.071 kb on - strand at 612.144 kb on + strand at 612.471 kb on + strand, within HSERO_RS02770 at 612.623 kb on - strand, within HSERO_RS02770 at 612.638 kb on + strand, within HSERO_RS02770 at 612.891 kb on + strand at 612.966 kb on - strand, within HSERO_RS02775
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 610,806 - HSERO_RS02755 0.49 -0.1 610,806 - HSERO_RS02755 0.49 -0.7 610,889 - HSERO_RS02755 0.64 +0.3 610,932 + HSERO_RS02755 0.72 +0.6 610,932 + HSERO_RS02755 0.72 +0.2 611,019 + HSERO_RS02755 0.87 -0.3 611,268 - HSERO_RS02760 0.23 -0.3 611,524 + HSERO_RS02760 0.75 -0.2 611,615 - -1.0 611,802 - HSERO_RS02765 0.12 +0.6 612,071 - -0.0 612,144 + -0.3 612,471 + HSERO_RS02770 0.22 +1.7 612,623 - HSERO_RS02770 0.83 +0.6 612,638 + HSERO_RS02770 0.89 +0.3 612,891 + -0.2 612,966 - HSERO_RS02775 0.20 +0.1
Or see this region's nucleotide sequence