Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02270 and HSERO_RS02275 are separated by 203 nucleotides HSERO_RS02275 and HSERO_RS02280 are separated by 46 nucleotides
HSERO_RS02270: HSERO_RS02270 - carboxymethylenebutenolidase, at 498,222 to 499,106
_RS02270
HSERO_RS02275: HSERO_RS02275 - hypothetical protein, at 499,310 to 499,546
_RS02275
HSERO_RS02280: HSERO_RS02280 - flavodoxin reductase, at 499,593 to 500,612
_RS02280
Position (kb) 499
500 Strain fitness (log2 ratio) -1
0
1 at 498.364 kb on - strand, within HSERO_RS02270 at 498.376 kb on + strand, within HSERO_RS02270 at 498.591 kb on + strand, within HSERO_RS02270 at 498.599 kb on - strand, within HSERO_RS02270 at 498.605 kb on - strand, within HSERO_RS02270 at 498.664 kb on - strand, within HSERO_RS02270 at 498.813 kb on - strand, within HSERO_RS02270 at 498.912 kb on - strand, within HSERO_RS02270 at 498.939 kb on - strand, within HSERO_RS02270 at 498.941 kb on + strand, within HSERO_RS02270 at 498.952 kb on - strand, within HSERO_RS02270 at 499.038 kb on + strand at 499.041 kb on - strand at 499.124 kb on - strand at 499.157 kb on + strand at 499.157 kb on + strand at 499.157 kb on + strand at 499.184 kb on - strand at 499.186 kb on - strand at 499.249 kb on + strand at 499.257 kb on - strand at 499.257 kb on - strand at 499.257 kb on - strand at 499.397 kb on - strand, within HSERO_RS02275 at 499.792 kb on + strand, within HSERO_RS02280 at 499.881 kb on + strand, within HSERO_RS02280 at 499.881 kb on + strand, within HSERO_RS02280 at 499.881 kb on + strand, within HSERO_RS02280 at 500.039 kb on + strand, within HSERO_RS02280 at 500.056 kb on + strand, within HSERO_RS02280 at 500.159 kb on + strand, within HSERO_RS02280 at 500.219 kb on - strand, within HSERO_RS02280 at 500.350 kb on - strand, within HSERO_RS02280 at 500.386 kb on + strand, within HSERO_RS02280 at 500.386 kb on + strand, within HSERO_RS02280
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 498,364 - HSERO_RS02270 0.16 -0.5 498,376 + HSERO_RS02270 0.17 +0.5 498,591 + HSERO_RS02270 0.42 -0.3 498,599 - HSERO_RS02270 0.43 -0.3 498,605 - HSERO_RS02270 0.43 +1.5 498,664 - HSERO_RS02270 0.50 +1.2 498,813 - HSERO_RS02270 0.67 +0.5 498,912 - HSERO_RS02270 0.78 +0.2 498,939 - HSERO_RS02270 0.81 +0.7 498,941 + HSERO_RS02270 0.81 +0.5 498,952 - HSERO_RS02270 0.82 -0.0 499,038 + -0.0 499,041 - -0.4 499,124 - -0.3 499,157 + -0.8 499,157 + -0.1 499,157 + +0.1 499,184 - +0.1 499,186 - +0.4 499,249 + -1.0 499,257 - -0.5 499,257 - +0.0 499,257 - -0.1 499,397 - HSERO_RS02275 0.37 +0.5 499,792 + HSERO_RS02280 0.20 -0.0 499,881 + HSERO_RS02280 0.28 -0.1 499,881 + HSERO_RS02280 0.28 +0.2 499,881 + HSERO_RS02280 0.28 -0.2 500,039 + HSERO_RS02280 0.44 -0.4 500,056 + HSERO_RS02280 0.45 -0.0 500,159 + HSERO_RS02280 0.55 -0.8 500,219 - HSERO_RS02280 0.61 +0.0 500,350 - HSERO_RS02280 0.74 +0.2 500,386 + HSERO_RS02280 0.78 +0.3 500,386 + HSERO_RS02280 0.78 -0.4
Or see this region's nucleotide sequence