Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02010 and HSERO_RS02015 are separated by 103 nucleotides HSERO_RS02015 and HSERO_RS02020 are separated by 257 nucleotides
HSERO_RS02010: HSERO_RS02010 - anhydro-N-acetylmuramic acid kinase, at 439,654 to 440,781
_RS02010
HSERO_RS02015: HSERO_RS02015 - peptidase M23, at 440,885 to 442,282
_RS02015
HSERO_RS02020: HSERO_RS02020 - tyrosyl-tRNA synthetase, at 442,540 to 443,790
_RS02020
Position (kb) 440
441
442
443 Strain fitness (log2 ratio) -2
-1
0
1 at 439.888 kb on + strand, within HSERO_RS02010 at 439.914 kb on + strand, within HSERO_RS02010 at 439.951 kb on + strand, within HSERO_RS02010 at 439.968 kb on - strand, within HSERO_RS02010 at 439.968 kb on - strand, within HSERO_RS02010 at 439.997 kb on - strand, within HSERO_RS02010 at 440.020 kb on + strand, within HSERO_RS02010 at 440.214 kb on - strand, within HSERO_RS02010 at 440.279 kb on + strand, within HSERO_RS02010 at 440.742 kb on + strand at 440.763 kb on + strand at 440.764 kb on + strand at 440.880 kb on - strand at 441.376 kb on - strand, within HSERO_RS02015 at 441.731 kb on + strand, within HSERO_RS02015 at 441.764 kb on - strand, within HSERO_RS02015 at 442.021 kb on + strand, within HSERO_RS02015 at 442.244 kb on - strand at 442.248 kb on + strand at 442.256 kb on - strand at 442.407 kb on + strand at 442.418 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 439,888 + HSERO_RS02010 0.21 +0.1 439,914 + HSERO_RS02010 0.23 -0.2 439,951 + HSERO_RS02010 0.26 +0.6 439,968 - HSERO_RS02010 0.28 +0.4 439,968 - HSERO_RS02010 0.28 -0.3 439,997 - HSERO_RS02010 0.30 +0.1 440,020 + HSERO_RS02010 0.32 -2.0 440,214 - HSERO_RS02010 0.50 +0.0 440,279 + HSERO_RS02010 0.55 -0.6 440,742 + -0.6 440,763 + -0.0 440,764 + +0.6 440,880 - +0.6 441,376 - HSERO_RS02015 0.35 +0.7 441,731 + HSERO_RS02015 0.61 +0.5 441,764 - HSERO_RS02015 0.63 +0.4 442,021 + HSERO_RS02015 0.81 -0.3 442,244 - -0.0 442,248 + +0.4 442,256 - -0.0 442,407 + +0.3 442,418 + -0.4
Or see this region's nucleotide sequence