Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01545 and HSERO_RS01550 are separated by 107 nucleotides HSERO_RS01550 and HSERO_RS01555 are separated by 78 nucleotides
HSERO_RS01545: HSERO_RS01545 - sulfate transporter, at 340,347 to 341,837
_RS01545
HSERO_RS01550: HSERO_RS01550 - hypothetical protein, at 341,945 to 342,448
_RS01550
HSERO_RS01555: HSERO_RS01555 - RND transporter, at 342,527 to 344,041
_RS01555
Position (kb) 341
342
343 Strain fitness (log2 ratio) -1
0
1
2 at 341.028 kb on + strand, within HSERO_RS01545 at 341.064 kb on + strand, within HSERO_RS01545 at 341.141 kb on + strand, within HSERO_RS01545 at 341.143 kb on - strand, within HSERO_RS01545 at 341.292 kb on + strand, within HSERO_RS01545 at 341.341 kb on - strand, within HSERO_RS01545 at 341.466 kb on + strand, within HSERO_RS01545 at 341.678 kb on + strand, within HSERO_RS01545 at 341.724 kb on + strand at 341.724 kb on + strand at 341.746 kb on + strand at 342.015 kb on - strand, within HSERO_RS01550 at 342.056 kb on + strand, within HSERO_RS01550 at 342.239 kb on - strand, within HSERO_RS01550 at 342.296 kb on + strand, within HSERO_RS01550 at 342.523 kb on + strand at 342.531 kb on - strand at 342.597 kb on - strand at 342.755 kb on - strand, within HSERO_RS01555 at 342.755 kb on - strand, within HSERO_RS01555 at 342.821 kb on + strand, within HSERO_RS01555 at 342.829 kb on - strand, within HSERO_RS01555 at 342.886 kb on - strand, within HSERO_RS01555 at 342.928 kb on - strand, within HSERO_RS01555 at 342.979 kb on - strand, within HSERO_RS01555 at 343.380 kb on - strand, within HSERO_RS01555 at 343.422 kb on + strand at 343.440 kb on + strand, within HSERO_RS01555
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 341,028 + HSERO_RS01545 0.46 -0.2 341,064 + HSERO_RS01545 0.48 -0.6 341,141 + HSERO_RS01545 0.53 -0.6 341,143 - HSERO_RS01545 0.53 +1.1 341,292 + HSERO_RS01545 0.63 -0.7 341,341 - HSERO_RS01545 0.67 -0.4 341,466 + HSERO_RS01545 0.75 +0.5 341,678 + HSERO_RS01545 0.89 +0.2 341,724 + -1.1 341,724 + -0.6 341,746 + +0.6 342,015 - HSERO_RS01550 0.14 -0.0 342,056 + HSERO_RS01550 0.22 +0.3 342,239 - HSERO_RS01550 0.58 +1.1 342,296 + HSERO_RS01550 0.70 +1.9 342,523 + -0.3 342,531 - +0.4 342,597 - +0.2 342,755 - HSERO_RS01555 0.15 -0.0 342,755 - HSERO_RS01555 0.15 -0.0 342,821 + HSERO_RS01555 0.19 +0.3 342,829 - HSERO_RS01555 0.20 +0.5 342,886 - HSERO_RS01555 0.24 +0.5 342,928 - HSERO_RS01555 0.26 +0.0 342,979 - HSERO_RS01555 0.30 +0.3 343,380 - HSERO_RS01555 0.56 -0.8 343,422 + +0.5 343,440 + HSERO_RS01555 0.60 +0.0
Or see this region's nucleotide sequence