Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01455 and HSERO_RS01460 are separated by 289 nucleotides HSERO_RS01460 and HSERO_RS01465 are separated by 133 nucleotides HSERO_RS01465 and HSERO_RS01470 are separated by 10 nucleotides
HSERO_RS01455: HSERO_RS01455 - hypothetical protein, at 314,525 to 315,103
_RS01455
HSERO_RS01460: HSERO_RS01460 - transcriptional regulator, at 315,393 to 315,749
_RS01460
HSERO_RS01465: HSERO_RS01465 - CDP-diacylglycerol pyrophosphatase, at 315,883 to 316,647
_RS01465
HSERO_RS01470: HSERO_RS01470 - LysR family transcriptional regulator, at 316,658 to 317,548
_RS01470
Position (kb) 315
316 Strain fitness (log2 ratio) -1
0
1 at 314.406 kb on + strand at 314.406 kb on + strand at 314.406 kb on + strand at 314.414 kb on - strand at 314.421 kb on + strand at 314.426 kb on + strand at 314.675 kb on - strand, within HSERO_RS01455 at 314.836 kb on + strand, within HSERO_RS01455 at 315.131 kb on + strand at 315.215 kb on - strand at 315.657 kb on - strand, within HSERO_RS01460 at 315.798 kb on + strand at 315.860 kb on + strand at 315.899 kb on - strand at 316.058 kb on - strand, within HSERO_RS01465 at 316.214 kb on + strand, within HSERO_RS01465 at 316.231 kb on + strand at 316.231 kb on + strand, within HSERO_RS01465 at 316.519 kb on + strand, within HSERO_RS01465 at 316.551 kb on + strand, within HSERO_RS01465 at 316.558 kb on + strand, within HSERO_RS01465 at 316.558 kb on + strand, within HSERO_RS01465 at 316.608 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 314,406 + +0.3 314,406 + -0.6 314,406 + -0.6 314,414 - -0.8 314,421 + +0.3 314,426 + -0.9 314,675 - HSERO_RS01455 0.26 -0.5 314,836 + HSERO_RS01455 0.54 -1.2 315,131 + -0.3 315,215 - +0.4 315,657 - HSERO_RS01460 0.74 +0.4 315,798 + +0.5 315,860 + -1.0 315,899 - -0.1 316,058 - HSERO_RS01465 0.23 +1.3 316,214 + HSERO_RS01465 0.43 -0.0 316,231 + -0.6 316,231 + HSERO_RS01465 0.45 -0.1 316,519 + HSERO_RS01465 0.83 +0.4 316,551 + HSERO_RS01465 0.87 -0.4 316,558 + HSERO_RS01465 0.88 +0.8 316,558 + HSERO_RS01465 0.88 -0.6 316,608 - -0.3
Or see this region's nucleotide sequence