Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01430 and HSERO_RS01435 are separated by 30 nucleotides HSERO_RS01435 and HSERO_RS01440 are separated by 64 nucleotides
HSERO_RS01430: HSERO_RS01430 - phospholipase, at 308,723 to 309,973
_RS01430
HSERO_RS01435: HSERO_RS01435 - biopolymer transporter ExbB, at 310,004 to 310,630
_RS01435
HSERO_RS01440: HSERO_RS01440 - TonB-denpendent receptor, at 310,695 to 313,118
_RS01440
Position (kb) 310
311 Strain fitness (log2 ratio) -1
0
1
2 at 309.039 kb on - strand, within HSERO_RS01430 at 309.169 kb on + strand, within HSERO_RS01430 at 309.169 kb on + strand, within HSERO_RS01430 at 309.282 kb on - strand, within HSERO_RS01430 at 309.621 kb on - strand, within HSERO_RS01430 at 309.752 kb on - strand, within HSERO_RS01430 at 309.828 kb on - strand, within HSERO_RS01430 at 309.828 kb on - strand, within HSERO_RS01430 at 309.863 kb on - strand at 309.918 kb on - strand at 309.918 kb on - strand at 310.004 kb on - strand at 310.146 kb on - strand, within HSERO_RS01435 at 310.352 kb on - strand, within HSERO_RS01435 at 310.443 kb on - strand, within HSERO_RS01435 at 310.595 kb on + strand at 310.641 kb on + strand at 310.677 kb on + strand at 310.831 kb on - strand at 310.928 kb on + strand at 310.928 kb on + strand at 310.928 kb on + strand at 310.936 kb on - strand at 310.936 kb on - strand at 311.111 kb on + strand, within HSERO_RS01440 at 311.200 kb on - strand, within HSERO_RS01440 at 311.337 kb on + strand, within HSERO_RS01440
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 309,039 - HSERO_RS01430 0.25 -1.2 309,169 + HSERO_RS01430 0.36 +1.0 309,169 + HSERO_RS01430 0.36 +0.3 309,282 - HSERO_RS01430 0.45 +0.0 309,621 - HSERO_RS01430 0.72 +1.0 309,752 - HSERO_RS01430 0.82 +0.3 309,828 - HSERO_RS01430 0.88 +0.8 309,828 - HSERO_RS01430 0.88 -0.1 309,863 - +1.0 309,918 - -0.0 309,918 - +0.2 310,004 - +0.3 310,146 - HSERO_RS01435 0.23 -0.4 310,352 - HSERO_RS01435 0.56 +2.0 310,443 - HSERO_RS01435 0.70 +0.1 310,595 + +0.7 310,641 + -0.1 310,677 + -0.5 310,831 - -0.1 310,928 + -0.6 310,928 + +1.0 310,928 + -0.2 310,936 - +0.6 310,936 - -0.2 311,111 + HSERO_RS01440 0.17 -0.3 311,200 - HSERO_RS01440 0.21 +0.4 311,337 + HSERO_RS01440 0.26 -0.1
Or see this region's nucleotide sequence