Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01340 and HSERO_RS01345 are separated by 173 nucleotides HSERO_RS01345 and HSERO_RS01350 are separated by 138 nucleotides
HSERO_RS01340: HSERO_RS01340 - sugar ABC transporter permease, at 286,897 to 287,832
_RS01340
HSERO_RS01345: HSERO_RS01345 - sugar ABC transporter substrate-binding protein, at 288,006 to 289,253
_RS01345
HSERO_RS01350: HSERO_RS01350 - beta-galactosidase, at 289,392 to 291,368
_RS01350
Position (kb) 288
289
290 Strain fitness (log2 ratio) -2
-1
0
1 at 287.013 kb on + strand, within HSERO_RS01340 at 287.021 kb on - strand, within HSERO_RS01340 at 287.021 kb on - strand, within HSERO_RS01340 at 287.029 kb on + strand, within HSERO_RS01340 at 287.182 kb on - strand, within HSERO_RS01340 at 287.212 kb on - strand, within HSERO_RS01340 at 287.491 kb on + strand, within HSERO_RS01340 at 287.505 kb on - strand, within HSERO_RS01340 at 287.506 kb on - strand, within HSERO_RS01340 at 287.675 kb on + strand at 287.746 kb on + strand at 287.748 kb on + strand at 287.754 kb on - strand at 287.781 kb on - strand at 287.977 kb on + strand at 287.985 kb on - strand at 288.162 kb on - strand, within HSERO_RS01345 at 288.243 kb on + strand, within HSERO_RS01345 at 288.341 kb on + strand, within HSERO_RS01345 at 288.370 kb on - strand, within HSERO_RS01345 at 288.481 kb on + strand, within HSERO_RS01345 at 288.616 kb on + strand, within HSERO_RS01345 at 288.834 kb on + strand, within HSERO_RS01345 at 289.146 kb on + strand at 289.371 kb on - strand at 289.398 kb on + strand at 289.406 kb on - strand at 289.453 kb on + strand at 289.468 kb on + strand at 289.606 kb on + strand, within HSERO_RS01350 at 289.648 kb on - strand, within HSERO_RS01350 at 290.029 kb on + strand, within HSERO_RS01350 at 290.048 kb on + strand, within HSERO_RS01350
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 287,013 + HSERO_RS01340 0.12 -0.1 287,021 - HSERO_RS01340 0.13 +0.0 287,021 - HSERO_RS01340 0.13 +0.0 287,029 + HSERO_RS01340 0.14 -1.3 287,182 - HSERO_RS01340 0.30 +0.7 287,212 - HSERO_RS01340 0.34 -0.4 287,491 + HSERO_RS01340 0.63 +0.1 287,505 - HSERO_RS01340 0.65 -0.5 287,506 - HSERO_RS01340 0.65 -0.2 287,675 + +0.2 287,746 + +0.8 287,748 + -0.0 287,754 - -0.5 287,781 - -0.4 287,977 + -0.1 287,985 - +0.2 288,162 - HSERO_RS01345 0.12 -0.0 288,243 + HSERO_RS01345 0.19 +0.1 288,341 + HSERO_RS01345 0.27 +0.4 288,370 - HSERO_RS01345 0.29 +0.6 288,481 + HSERO_RS01345 0.38 +0.3 288,616 + HSERO_RS01345 0.49 +0.6 288,834 + HSERO_RS01345 0.66 +0.6 289,146 + +0.4 289,371 - +0.0 289,398 + -2.2 289,406 - -0.0 289,453 + -0.5 289,468 + -1.1 289,606 + HSERO_RS01350 0.11 +0.3 289,648 - HSERO_RS01350 0.13 +0.0 290,029 + HSERO_RS01350 0.32 +0.3 290,048 + HSERO_RS01350 0.33 +0.0
Or see this region's nucleotide sequence