Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01095 and HSERO_RS01100 are separated by 553 nucleotides HSERO_RS01100 and HSERO_RS01105 are separated by 40 nucleotides HSERO_RS01105 and HSERO_RS01110 are separated by 108 nucleotides HSERO_RS01110 and HSERO_RS01115 are separated by 303 nucleotides
HSERO_RS01095: HSERO_RS01095 - hypothetical protein, at 230,920 to 231,252
_RS01095
HSERO_RS01100: HSERO_RS01100 - hypothetical protein, at 231,806 to 231,997
_RS01100
HSERO_RS01105: HSERO_RS01105 - hypothetical protein, at 232,038 to 232,361
_RS01105
HSERO_RS01110: HSERO_RS01110 - hypothetical protein, at 232,470 to 232,967
_RS01110
HSERO_RS01115: HSERO_RS01115 - integrase, at 233,271 to 235,010
_RS01115
Position (kb) 232
233 Strain fitness (log2 ratio) -1
0
1 at 231.357 kb on - strand at 231.459 kb on - strand at 231.588 kb on + strand at 231.664 kb on - strand at 231.802 kb on + strand at 231.820 kb on - strand at 231.846 kb on + strand, within HSERO_RS01100 at 231.854 kb on - strand, within HSERO_RS01100 at 231.854 kb on - strand, within HSERO_RS01100 at 231.856 kb on + strand, within HSERO_RS01100 at 231.864 kb on - strand, within HSERO_RS01100 at 231.864 kb on - strand, within HSERO_RS01100 at 231.864 kb on - strand, within HSERO_RS01100 at 231.864 kb on - strand, within HSERO_RS01100 at 232.103 kb on - strand, within HSERO_RS01105 at 232.172 kb on + strand, within HSERO_RS01105 at 232.328 kb on + strand, within HSERO_RS01105 at 232.341 kb on - strand at 232.355 kb on + strand at 232.355 kb on + strand at 232.363 kb on - strand at 232.401 kb on + strand at 232.592 kb on - strand, within HSERO_RS01110 at 232.612 kb on - strand, within HSERO_RS01110 at 232.855 kb on - strand, within HSERO_RS01110 at 232.874 kb on - strand, within HSERO_RS01110 at 232.899 kb on - strand, within HSERO_RS01110 at 232.914 kb on + strand, within HSERO_RS01110 at 233.129 kb on + strand at 233.348 kb on - strand at 233.350 kb on - strand at 233.353 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 231,357 - +0.2 231,459 - -0.3 231,588 + -0.1 231,664 - -0.7 231,802 + -0.4 231,820 - +0.1 231,846 + HSERO_RS01100 0.21 +0.1 231,854 - HSERO_RS01100 0.25 +0.2 231,854 - HSERO_RS01100 0.25 -0.8 231,856 + HSERO_RS01100 0.26 -1.1 231,864 - HSERO_RS01100 0.30 -0.1 231,864 - HSERO_RS01100 0.30 -0.2 231,864 - HSERO_RS01100 0.30 -0.5 231,864 - HSERO_RS01100 0.30 -0.3 232,103 - HSERO_RS01105 0.20 +0.1 232,172 + HSERO_RS01105 0.41 +0.8 232,328 + HSERO_RS01105 0.90 -0.0 232,341 - +0.3 232,355 + +0.0 232,355 + -0.1 232,363 - -0.5 232,401 + -0.3 232,592 - HSERO_RS01110 0.24 -1.5 232,612 - HSERO_RS01110 0.29 -0.4 232,855 - HSERO_RS01110 0.77 -0.2 232,874 - HSERO_RS01110 0.81 +0.1 232,899 - HSERO_RS01110 0.86 -0.2 232,914 + HSERO_RS01110 0.89 +0.3 233,129 + +0.3 233,348 - +0.4 233,350 - -1.0 233,353 + +0.1
Or see this region's nucleotide sequence