Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00125 and HSERO_RS00130 overlap by 4 nucleotides HSERO_RS00130 and HSERO_RS00135 overlap by 10 nucleotides HSERO_RS00135 and HSERO_RS00140 overlap by 4 nucleotides
HSERO_RS00125: HSERO_RS00125 - hypothetical protein, at 37,678 to 38,736
_RS00125
HSERO_RS00130: HSERO_RS00130 - hypothetical protein, at 38,733 to 39,218
_RS00130
HSERO_RS00135: HSERO_RS00135 - hypothetical protein, at 39,209 to 39,643
_RS00135
HSERO_RS00140: HSERO_RS00140 - hypothetical protein, at 39,640 to 40,713
_RS00140
Position (kb) 39
40 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 38.210 kb on - strand, within HSERO_RS00125 at 38.210 kb on - strand, within HSERO_RS00125 at 38.334 kb on - strand, within HSERO_RS00125 at 38.451 kb on + strand, within HSERO_RS00125 at 38.459 kb on - strand, within HSERO_RS00125 at 38.474 kb on + strand, within HSERO_RS00125 at 38.475 kb on + strand, within HSERO_RS00125 at 38.667 kb on + strand at 38.780 kb on - strand at 38.833 kb on + strand, within HSERO_RS00130 at 38.839 kb on - strand, within HSERO_RS00130 at 38.861 kb on - strand, within HSERO_RS00130 at 38.870 kb on - strand, within HSERO_RS00130 at 38.880 kb on - strand, within HSERO_RS00130 at 38.915 kb on + strand, within HSERO_RS00130 at 38.963 kb on - strand, within HSERO_RS00130 at 39.160 kb on + strand, within HSERO_RS00130 at 39.202 kb on - strand at 39.212 kb on + strand at 39.286 kb on + strand, within HSERO_RS00135 at 39.299 kb on - strand, within HSERO_RS00135 at 39.305 kb on - strand, within HSERO_RS00135 at 39.323 kb on - strand, within HSERO_RS00135 at 39.361 kb on + strand, within HSERO_RS00135 at 39.408 kb on + strand, within HSERO_RS00135 at 39.578 kb on - strand, within HSERO_RS00135 at 39.613 kb on + strand at 39.705 kb on + strand at 39.713 kb on - strand at 39.777 kb on + strand, within HSERO_RS00140 at 39.785 kb on - strand, within HSERO_RS00140 at 39.785 kb on - strand, within HSERO_RS00140 at 39.865 kb on - strand, within HSERO_RS00140 at 39.883 kb on - strand, within HSERO_RS00140 at 39.923 kb on - strand, within HSERO_RS00140 at 39.980 kb on - strand, within HSERO_RS00140 at 39.980 kb on - strand, within HSERO_RS00140 at 40.007 kb on + strand, within HSERO_RS00140 at 40.041 kb on + strand, within HSERO_RS00140 at 40.041 kb on + strand, within HSERO_RS00140 at 40.041 kb on + strand, within HSERO_RS00140 at 40.063 kb on + strand, within HSERO_RS00140 at 40.080 kb on + strand, within HSERO_RS00140 at 40.088 kb on - strand, within HSERO_RS00140 at 40.088 kb on - strand, within HSERO_RS00140 at 40.204 kb on - strand, within HSERO_RS00140 at 40.422 kb on + strand, within HSERO_RS00140 at 40.453 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 38,210 - HSERO_RS00125 0.50 -0.1 38,210 - HSERO_RS00125 0.50 -0.0 38,334 - HSERO_RS00125 0.62 +0.3 38,451 + HSERO_RS00125 0.73 -0.3 38,459 - HSERO_RS00125 0.74 +0.5 38,474 + HSERO_RS00125 0.75 +0.2 38,475 + HSERO_RS00125 0.75 -0.2 38,667 + +0.4 38,780 - +0.1 38,833 + HSERO_RS00130 0.21 +0.4 38,839 - HSERO_RS00130 0.22 +0.3 38,861 - HSERO_RS00130 0.26 +1.3 38,870 - HSERO_RS00130 0.28 +1.5 38,880 - HSERO_RS00130 0.30 +0.1 38,915 + HSERO_RS00130 0.37 -0.5 38,963 - HSERO_RS00130 0.47 +0.4 39,160 + HSERO_RS00130 0.88 +3.2 39,202 - -0.2 39,212 + +0.3 39,286 + HSERO_RS00135 0.18 +0.6 39,299 - HSERO_RS00135 0.21 +0.4 39,305 - HSERO_RS00135 0.22 +1.1 39,323 - HSERO_RS00135 0.26 -0.0 39,361 + HSERO_RS00135 0.35 -0.3 39,408 + HSERO_RS00135 0.46 +0.1 39,578 - HSERO_RS00135 0.85 +0.3 39,613 + -0.2 39,705 + -0.2 39,713 - -0.1 39,777 + HSERO_RS00140 0.13 -0.4 39,785 - HSERO_RS00140 0.14 -0.1 39,785 - HSERO_RS00140 0.14 +0.6 39,865 - HSERO_RS00140 0.21 -0.9 39,883 - HSERO_RS00140 0.23 +0.3 39,923 - HSERO_RS00140 0.26 +0.4 39,980 - HSERO_RS00140 0.32 -0.4 39,980 - HSERO_RS00140 0.32 +0.1 40,007 + HSERO_RS00140 0.34 +0.2 40,041 + HSERO_RS00140 0.37 +0.0 40,041 + HSERO_RS00140 0.37 -0.9 40,041 + HSERO_RS00140 0.37 +0.1 40,063 + HSERO_RS00140 0.39 -0.3 40,080 + HSERO_RS00140 0.41 -0.5 40,088 - HSERO_RS00140 0.42 -1.9 40,088 - HSERO_RS00140 0.42 +0.1 40,204 - HSERO_RS00140 0.53 -1.0 40,422 + HSERO_RS00140 0.73 +0.5 40,453 - +0.2
Or see this region's nucleotide sequence