Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS00130

Experiment: L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS00125 and HSERO_RS00130 overlap by 4 nucleotidesHSERO_RS00130 and HSERO_RS00135 overlap by 10 nucleotidesHSERO_RS00135 and HSERO_RS00140 overlap by 4 nucleotides HSERO_RS00125: HSERO_RS00125 - hypothetical protein, at 37,678 to 38,736 _RS00125 HSERO_RS00130: HSERO_RS00130 - hypothetical protein, at 38,733 to 39,218 _RS00130 HSERO_RS00135: HSERO_RS00135 - hypothetical protein, at 39,209 to 39,643 _RS00135 HSERO_RS00140: HSERO_RS00140 - hypothetical protein, at 39,640 to 40,713 _RS00140 Position (kb) 38 39 40Strain fitness (log2 ratio) -2 -1 0 1 2 3at 37.740 kb on + strandat 37.740 kb on + strandat 37.796 kb on - strand, within HSERO_RS00125at 37.806 kb on + strand, within HSERO_RS00125at 37.844 kb on + strand, within HSERO_RS00125at 37.844 kb on + strand, within HSERO_RS00125at 37.849 kb on + strand, within HSERO_RS00125at 37.849 kb on + strand, within HSERO_RS00125at 37.852 kb on - strand, within HSERO_RS00125at 37.857 kb on - strand, within HSERO_RS00125at 37.857 kb on - strand, within HSERO_RS00125at 37.857 kb on - strand, within HSERO_RS00125at 37.903 kb on + strand, within HSERO_RS00125at 37.904 kb on + strand, within HSERO_RS00125at 37.911 kb on - strand, within HSERO_RS00125at 37.911 kb on - strand, within HSERO_RS00125at 37.947 kb on - strand, within HSERO_RS00125at 37.979 kb on + strand, within HSERO_RS00125at 38.016 kb on - strand, within HSERO_RS00125at 38.024 kb on + strand, within HSERO_RS00125at 38.065 kb on + strand, within HSERO_RS00125at 38.183 kb on + strand, within HSERO_RS00125at 38.202 kb on + strand, within HSERO_RS00125at 38.210 kb on - strand, within HSERO_RS00125at 38.210 kb on - strand, within HSERO_RS00125at 38.334 kb on - strand, within HSERO_RS00125at 38.451 kb on + strand, within HSERO_RS00125at 38.459 kb on - strand, within HSERO_RS00125at 38.474 kb on + strand, within HSERO_RS00125at 38.475 kb on + strand, within HSERO_RS00125at 38.667 kb on + strandat 38.780 kb on - strandat 38.833 kb on + strand, within HSERO_RS00130at 38.839 kb on - strand, within HSERO_RS00130at 38.861 kb on - strand, within HSERO_RS00130at 38.870 kb on - strand, within HSERO_RS00130at 38.880 kb on - strand, within HSERO_RS00130at 38.915 kb on + strand, within HSERO_RS00130at 38.963 kb on - strand, within HSERO_RS00130at 39.160 kb on + strand, within HSERO_RS00130at 39.202 kb on - strandat 39.212 kb on + strandat 39.286 kb on + strand, within HSERO_RS00135at 39.299 kb on - strand, within HSERO_RS00135at 39.305 kb on - strand, within HSERO_RS00135at 39.323 kb on - strand, within HSERO_RS00135at 39.361 kb on + strand, within HSERO_RS00135at 39.408 kb on + strand, within HSERO_RS00135at 39.578 kb on - strand, within HSERO_RS00135at 39.613 kb on + strandat 39.705 kb on + strandat 39.713 kb on - strandat 39.777 kb on + strand, within HSERO_RS00140at 39.785 kb on - strand, within HSERO_RS00140at 39.785 kb on - strand, within HSERO_RS00140at 39.865 kb on - strand, within HSERO_RS00140at 39.883 kb on - strand, within HSERO_RS00140at 39.923 kb on - strand, within HSERO_RS00140at 39.980 kb on - strand, within HSERO_RS00140at 39.980 kb on - strand, within HSERO_RS00140at 40.007 kb on + strand, within HSERO_RS00140at 40.041 kb on + strand, within HSERO_RS00140at 40.041 kb on + strand, within HSERO_RS00140at 40.041 kb on + strand, within HSERO_RS00140at 40.063 kb on + strand, within HSERO_RS00140at 40.080 kb on + strand, within HSERO_RS00140at 40.088 kb on - strand, within HSERO_RS00140at 40.088 kb on - strand, within HSERO_RS00140at 40.204 kb on - strand, within HSERO_RS00140

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine
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37,740 + +0.4
37,740 + +0.6
37,796 - HSERO_RS00125 0.11 +0.5
37,806 + HSERO_RS00125 0.12 -0.1
37,844 + HSERO_RS00125 0.16 -0.1
37,844 + HSERO_RS00125 0.16 +0.4
37,849 + HSERO_RS00125 0.16 -0.4
37,849 + HSERO_RS00125 0.16 -0.6
37,852 - HSERO_RS00125 0.16 -0.1
37,857 - HSERO_RS00125 0.17 +0.1
37,857 - HSERO_RS00125 0.17 -1.3
37,857 - HSERO_RS00125 0.17 +0.1
37,903 + HSERO_RS00125 0.21 -0.6
37,904 + HSERO_RS00125 0.21 -0.1
37,911 - HSERO_RS00125 0.22 +0.3
37,911 - HSERO_RS00125 0.22 +0.2
37,947 - HSERO_RS00125 0.25 +0.4
37,979 + HSERO_RS00125 0.28 -0.2
38,016 - HSERO_RS00125 0.32 -0.1
38,024 + HSERO_RS00125 0.33 +0.1
38,065 + HSERO_RS00125 0.37 +0.6
38,183 + HSERO_RS00125 0.48 +0.1
38,202 + HSERO_RS00125 0.49 -0.4
38,210 - HSERO_RS00125 0.50 -0.1
38,210 - HSERO_RS00125 0.50 -0.0
38,334 - HSERO_RS00125 0.62 +0.3
38,451 + HSERO_RS00125 0.73 -0.3
38,459 - HSERO_RS00125 0.74 +0.5
38,474 + HSERO_RS00125 0.75 +0.2
38,475 + HSERO_RS00125 0.75 -0.2
38,667 + +0.4
38,780 - +0.1
38,833 + HSERO_RS00130 0.21 +0.4
38,839 - HSERO_RS00130 0.22 +0.3
38,861 - HSERO_RS00130 0.26 +1.3
38,870 - HSERO_RS00130 0.28 +1.5
38,880 - HSERO_RS00130 0.30 +0.1
38,915 + HSERO_RS00130 0.37 -0.5
38,963 - HSERO_RS00130 0.47 +0.4
39,160 + HSERO_RS00130 0.88 +3.2
39,202 - -0.2
39,212 + +0.3
39,286 + HSERO_RS00135 0.18 +0.6
39,299 - HSERO_RS00135 0.21 +0.4
39,305 - HSERO_RS00135 0.22 +1.1
39,323 - HSERO_RS00135 0.26 -0.0
39,361 + HSERO_RS00135 0.35 -0.3
39,408 + HSERO_RS00135 0.46 +0.1
39,578 - HSERO_RS00135 0.85 +0.3
39,613 + -0.2
39,705 + -0.2
39,713 - -0.1
39,777 + HSERO_RS00140 0.13 -0.4
39,785 - HSERO_RS00140 0.14 -0.1
39,785 - HSERO_RS00140 0.14 +0.6
39,865 - HSERO_RS00140 0.21 -0.9
39,883 - HSERO_RS00140 0.23 +0.3
39,923 - HSERO_RS00140 0.26 +0.4
39,980 - HSERO_RS00140 0.32 -0.4
39,980 - HSERO_RS00140 0.32 +0.1
40,007 + HSERO_RS00140 0.34 +0.2
40,041 + HSERO_RS00140 0.37 +0.0
40,041 + HSERO_RS00140 0.37 -0.9
40,041 + HSERO_RS00140 0.37 +0.1
40,063 + HSERO_RS00140 0.39 -0.3
40,080 + HSERO_RS00140 0.41 -0.5
40,088 - HSERO_RS00140 0.42 -1.9
40,088 - HSERO_RS00140 0.42 +0.1
40,204 - HSERO_RS00140 0.53 -1.0

Or see this region's nucleotide sequence