Experiment: Bacitracin 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_3435 and Ga0059261_3436 overlap by 4 nucleotides Ga0059261_3436 and Ga0059261_3437 are separated by 143 nucleotides Ga0059261_3437 and Ga0059261_3438 are separated by 97 nucleotides
Ga0059261_3435: Ga0059261_3435 - RNA polymerase sigma factor, sigma-70 family, at 3,561,725 to 3,562,582
_3435
Ga0059261_3436: Ga0059261_3436 - alkylhydroperoxidase AhpD family core domain, at 3,562,579 to 3,563,046
_3436
Ga0059261_3437: Ga0059261_3437 - hypothetical protein, at 3,563,190 to 3,563,576
_3437
Ga0059261_3438: Ga0059261_3438 - Nucleotidyltransferase/DNA polymerase involved in DNA repair, at 3,563,674 to 3,564,978
_3438
Position (kb)
3563
3564 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3562.336 kb on + strand, within Ga0059261_3435 at 3562.337 kb on - strand, within Ga0059261_3435 at 3562.338 kb on + strand, within Ga0059261_3435 at 3562.338 kb on + strand, within Ga0059261_3435 at 3562.338 kb on + strand, within Ga0059261_3435 at 3562.338 kb on + strand, within Ga0059261_3435 at 3562.338 kb on + strand, within Ga0059261_3435 at 3562.338 kb on + strand, within Ga0059261_3435 at 3562.338 kb on + strand, within Ga0059261_3435 at 3562.338 kb on + strand, within Ga0059261_3435 at 3562.338 kb on + strand, within Ga0059261_3435 at 3562.338 kb on + strand, within Ga0059261_3435 at 3562.339 kb on - strand, within Ga0059261_3435 at 3562.339 kb on - strand, within Ga0059261_3435 at 3562.339 kb on - strand, within Ga0059261_3435 at 3562.339 kb on - strand, within Ga0059261_3435 at 3562.339 kb on - strand, within Ga0059261_3435 at 3562.339 kb on - strand at 3562.339 kb on - strand, within Ga0059261_3435 at 3562.339 kb on - strand at 3562.339 kb on - strand, within Ga0059261_3435 at 3562.339 kb on - strand, within Ga0059261_3435 at 3562.339 kb on - strand, within Ga0059261_3435 at 3562.339 kb on - strand, within Ga0059261_3435 at 3562.339 kb on - strand, within Ga0059261_3435 at 3562.339 kb on - strand, within Ga0059261_3435 at 3562.510 kb on - strand at 3562.704 kb on + strand, within Ga0059261_3436 at 3562.705 kb on - strand, within Ga0059261_3436 at 3562.727 kb on + strand, within Ga0059261_3436 at 3562.727 kb on + strand, within Ga0059261_3436 at 3562.727 kb on + strand, within Ga0059261_3436 at 3562.727 kb on + strand, within Ga0059261_3436 at 3562.727 kb on + strand, within Ga0059261_3436 at 3562.727 kb on + strand, within Ga0059261_3436 at 3562.727 kb on + strand, within Ga0059261_3436 at 3562.727 kb on + strand, within Ga0059261_3436 at 3562.727 kb on + strand, within Ga0059261_3436 at 3562.728 kb on - strand, within Ga0059261_3436 at 3562.728 kb on - strand, within Ga0059261_3436 at 3562.728 kb on - strand, within Ga0059261_3436 at 3562.728 kb on - strand, within Ga0059261_3436 at 3562.728 kb on - strand, within Ga0059261_3436 at 3562.841 kb on + strand, within Ga0059261_3436 at 3562.841 kb on + strand at 3562.841 kb on + strand, within Ga0059261_3436 at 3562.841 kb on + strand, within Ga0059261_3436 at 3562.841 kb on + strand, within Ga0059261_3436 at 3562.841 kb on + strand, within Ga0059261_3436 at 3562.841 kb on + strand, within Ga0059261_3436 at 3562.841 kb on + strand, within Ga0059261_3436 at 3562.841 kb on + strand, within Ga0059261_3436 at 3562.842 kb on - strand, within Ga0059261_3436 at 3562.842 kb on - strand, within Ga0059261_3436 at 3562.842 kb on - strand, within Ga0059261_3436 at 3562.842 kb on - strand, within Ga0059261_3436 at 3562.842 kb on - strand, within Ga0059261_3436 at 3562.842 kb on - strand, within Ga0059261_3436 at 3562.842 kb on - strand, within Ga0059261_3436 at 3562.842 kb on - strand, within Ga0059261_3436 at 3563.263 kb on + strand, within Ga0059261_3437 at 3563.576 kb on + strand at 3563.577 kb on - strand at 3563.595 kb on + strand at 3563.596 kb on - strand at 3563.596 kb on - strand at 3563.596 kb on - strand at 3563.606 kb on + strand at 3563.606 kb on + strand at 3563.606 kb on + strand at 3563.606 kb on + strand at 3563.606 kb on + strand at 3563.606 kb on + strand at 3563.606 kb on + strand at 3563.607 kb on - strand at 3563.607 kb on - strand at 3563.607 kb on - strand at 3563.619 kb on + strand at 3563.619 kb on + strand at 3563.619 kb on + strand at 3563.619 kb on + strand at 3563.619 kb on + strand at 3563.619 kb on + strand at 3563.619 kb on + strand at 3563.619 kb on + strand at 3563.620 kb on - strand at 3563.620 kb on - strand at 3563.620 kb on - strand at 3564.104 kb on + strand, within Ga0059261_3438 at 3564.104 kb on + strand, within Ga0059261_3438 at 3564.104 kb on + strand, within Ga0059261_3438 at 3564.104 kb on + strand, within Ga0059261_3438 at 3564.104 kb on + strand, within Ga0059261_3438 at 3564.104 kb on + strand, within Ga0059261_3438 at 3564.105 kb on - strand, within Ga0059261_3438 at 3564.105 kb on - strand, within Ga0059261_3438 at 3564.216 kb on + strand, within Ga0059261_3438 at 3564.217 kb on - strand at 3564.217 kb on - strand, within Ga0059261_3438 at 3564.263 kb on + strand, within Ga0059261_3438 at 3564.264 kb on - strand, within Ga0059261_3438
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.12 mg/ml remove 3,562,336 + Ga0059261_3435 0.71 -0.4 3,562,337 - Ga0059261_3435 0.71 -1.0 3,562,338 + Ga0059261_3435 0.71 +0.7 3,562,338 + Ga0059261_3435 0.71 +0.5 3,562,338 + Ga0059261_3435 0.71 -0.1 3,562,338 + Ga0059261_3435 0.71 -0.5 3,562,338 + Ga0059261_3435 0.71 -0.7 3,562,338 + Ga0059261_3435 0.71 +0.7 3,562,338 + Ga0059261_3435 0.71 -0.1 3,562,338 + Ga0059261_3435 0.71 -0.2 3,562,338 + Ga0059261_3435 0.71 +0.5 3,562,338 + Ga0059261_3435 0.71 +0.1 3,562,339 - Ga0059261_3435 0.72 -0.5 3,562,339 - Ga0059261_3435 0.72 +0.9 3,562,339 - Ga0059261_3435 0.72 +0.1 3,562,339 - Ga0059261_3435 0.72 +0.7 3,562,339 - Ga0059261_3435 0.72 +0.4 3,562,339 - +0.5 3,562,339 - Ga0059261_3435 0.72 -0.5 3,562,339 - +1.5 3,562,339 - Ga0059261_3435 0.72 +0.6 3,562,339 - Ga0059261_3435 0.72 +0.5 3,562,339 - Ga0059261_3435 0.72 -0.2 3,562,339 - Ga0059261_3435 0.72 +0.2 3,562,339 - Ga0059261_3435 0.72 +0.4 3,562,339 - Ga0059261_3435 0.72 +0.5 3,562,510 - +0.0 3,562,704 + Ga0059261_3436 0.27 +0.9 3,562,705 - Ga0059261_3436 0.27 -0.8 3,562,727 + Ga0059261_3436 0.32 +0.4 3,562,727 + Ga0059261_3436 0.32 -0.1 3,562,727 + Ga0059261_3436 0.32 +0.1 3,562,727 + Ga0059261_3436 0.32 -0.1 3,562,727 + Ga0059261_3436 0.32 +0.3 3,562,727 + Ga0059261_3436 0.32 +0.5 3,562,727 + Ga0059261_3436 0.32 +0.0 3,562,727 + Ga0059261_3436 0.32 +0.7 3,562,727 + Ga0059261_3436 0.32 +0.5 3,562,728 - Ga0059261_3436 0.32 -0.5 3,562,728 - Ga0059261_3436 0.32 -0.6 3,562,728 - Ga0059261_3436 0.32 -1.0 3,562,728 - Ga0059261_3436 0.32 +0.5 3,562,728 - Ga0059261_3436 0.32 -0.8 3,562,841 + Ga0059261_3436 0.56 +1.2 3,562,841 + +0.2 3,562,841 + Ga0059261_3436 0.56 +0.5 3,562,841 + Ga0059261_3436 0.56 -0.4 3,562,841 + Ga0059261_3436 0.56 -1.4 3,562,841 + Ga0059261_3436 0.56 +0.1 3,562,841 + Ga0059261_3436 0.56 +1.2 3,562,841 + Ga0059261_3436 0.56 -0.8 3,562,841 + Ga0059261_3436 0.56 -0.4 3,562,842 - Ga0059261_3436 0.56 -0.3 3,562,842 - Ga0059261_3436 0.56 -0.6 3,562,842 - Ga0059261_3436 0.56 -0.2 3,562,842 - Ga0059261_3436 0.56 -1.9 3,562,842 - Ga0059261_3436 0.56 -0.7 3,562,842 - Ga0059261_3436 0.56 -0.0 3,562,842 - Ga0059261_3436 0.56 +0.3 3,562,842 - Ga0059261_3436 0.56 -0.2 3,563,263 + Ga0059261_3437 0.19 -0.9 3,563,576 + +0.2 3,563,577 - -0.2 3,563,595 + +0.6 3,563,596 - -0.1 3,563,596 - -0.4 3,563,596 - -0.3 3,563,606 + +0.7 3,563,606 + +2.0 3,563,606 + -1.0 3,563,606 + -0.8 3,563,606 + -0.1 3,563,606 + -0.4 3,563,606 + -0.9 3,563,607 - -0.3 3,563,607 - -0.2 3,563,607 - +0.8 3,563,619 + -0.4 3,563,619 + +0.5 3,563,619 + -0.1 3,563,619 + +0.3 3,563,619 + +0.9 3,563,619 + +1.5 3,563,619 + +0.7 3,563,619 + +1.2 3,563,620 - +0.0 3,563,620 - -0.2 3,563,620 - -0.1 3,564,104 + Ga0059261_3438 0.33 +0.3 3,564,104 + Ga0059261_3438 0.33 +0.7 3,564,104 + Ga0059261_3438 0.33 -0.4 3,564,104 + Ga0059261_3438 0.33 +0.3 3,564,104 + Ga0059261_3438 0.33 -0.3 3,564,104 + Ga0059261_3438 0.33 +0.1 3,564,105 - Ga0059261_3438 0.33 +0.0 3,564,105 - Ga0059261_3438 0.33 -0.4 3,564,216 + Ga0059261_3438 0.42 -0.4 3,564,217 - +0.2 3,564,217 - Ga0059261_3438 0.42 -0.9 3,564,263 + Ga0059261_3438 0.45 -1.0 3,564,264 - Ga0059261_3438 0.45 +0.1
Or see this region's nucleotide sequence