Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3437

Experiment: Bacitracin 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3435 and Ga0059261_3436 overlap by 4 nucleotidesGa0059261_3436 and Ga0059261_3437 are separated by 143 nucleotidesGa0059261_3437 and Ga0059261_3438 are separated by 97 nucleotides Ga0059261_3435: Ga0059261_3435 - RNA polymerase sigma factor, sigma-70 family, at 3,561,725 to 3,562,582 _3435 Ga0059261_3436: Ga0059261_3436 - alkylhydroperoxidase AhpD family core domain, at 3,562,579 to 3,563,046 _3436 Ga0059261_3437: Ga0059261_3437 - hypothetical protein, at 3,563,190 to 3,563,576 _3437 Ga0059261_3438: Ga0059261_3438 - Nucleotidyltransferase/DNA polymerase involved in DNA repair, at 3,563,674 to 3,564,978 _3438 Position (kb) 3563 3564Strain fitness (log2 ratio) -2 -1 0 1 2at 3562.336 kb on + strand, within Ga0059261_3435at 3562.337 kb on - strand, within Ga0059261_3435at 3562.338 kb on + strand, within Ga0059261_3435at 3562.338 kb on + strand, within Ga0059261_3435at 3562.338 kb on + strand, within Ga0059261_3435at 3562.338 kb on + strand, within Ga0059261_3435at 3562.338 kb on + strand, within Ga0059261_3435at 3562.338 kb on + strand, within Ga0059261_3435at 3562.338 kb on + strand, within Ga0059261_3435at 3562.338 kb on + strand, within Ga0059261_3435at 3562.338 kb on + strand, within Ga0059261_3435at 3562.338 kb on + strand, within Ga0059261_3435at 3562.339 kb on - strand, within Ga0059261_3435at 3562.339 kb on - strand, within Ga0059261_3435at 3562.339 kb on - strand, within Ga0059261_3435at 3562.339 kb on - strand, within Ga0059261_3435at 3562.339 kb on - strand, within Ga0059261_3435at 3562.339 kb on - strandat 3562.339 kb on - strand, within Ga0059261_3435at 3562.339 kb on - strandat 3562.339 kb on - strand, within Ga0059261_3435at 3562.339 kb on - strand, within Ga0059261_3435at 3562.339 kb on - strand, within Ga0059261_3435at 3562.339 kb on - strand, within Ga0059261_3435at 3562.339 kb on - strand, within Ga0059261_3435at 3562.339 kb on - strand, within Ga0059261_3435at 3562.510 kb on - strandat 3562.704 kb on + strand, within Ga0059261_3436at 3562.705 kb on - strand, within Ga0059261_3436at 3562.727 kb on + strand, within Ga0059261_3436at 3562.727 kb on + strand, within Ga0059261_3436at 3562.727 kb on + strand, within Ga0059261_3436at 3562.727 kb on + strand, within Ga0059261_3436at 3562.727 kb on + strand, within Ga0059261_3436at 3562.727 kb on + strand, within Ga0059261_3436at 3562.727 kb on + strand, within Ga0059261_3436at 3562.727 kb on + strand, within Ga0059261_3436at 3562.727 kb on + strand, within Ga0059261_3436at 3562.728 kb on - strand, within Ga0059261_3436at 3562.728 kb on - strand, within Ga0059261_3436at 3562.728 kb on - strand, within Ga0059261_3436at 3562.728 kb on - strand, within Ga0059261_3436at 3562.728 kb on - strand, within Ga0059261_3436at 3562.841 kb on + strand, within Ga0059261_3436at 3562.841 kb on + strandat 3562.841 kb on + strand, within Ga0059261_3436at 3562.841 kb on + strand, within Ga0059261_3436at 3562.841 kb on + strand, within Ga0059261_3436at 3562.841 kb on + strand, within Ga0059261_3436at 3562.841 kb on + strand, within Ga0059261_3436at 3562.841 kb on + strand, within Ga0059261_3436at 3562.841 kb on + strand, within Ga0059261_3436at 3562.842 kb on - strand, within Ga0059261_3436at 3562.842 kb on - strand, within Ga0059261_3436at 3562.842 kb on - strand, within Ga0059261_3436at 3562.842 kb on - strand, within Ga0059261_3436at 3562.842 kb on - strand, within Ga0059261_3436at 3562.842 kb on - strand, within Ga0059261_3436at 3562.842 kb on - strand, within Ga0059261_3436at 3562.842 kb on - strand, within Ga0059261_3436at 3563.263 kb on + strand, within Ga0059261_3437at 3563.576 kb on + strandat 3563.577 kb on - strandat 3563.595 kb on + strandat 3563.596 kb on - strandat 3563.596 kb on - strandat 3563.596 kb on - strandat 3563.606 kb on + strandat 3563.606 kb on + strandat 3563.606 kb on + strandat 3563.606 kb on + strandat 3563.606 kb on + strandat 3563.606 kb on + strandat 3563.606 kb on + strandat 3563.607 kb on - strandat 3563.607 kb on - strandat 3563.607 kb on - strandat 3563.619 kb on + strandat 3563.619 kb on + strandat 3563.619 kb on + strandat 3563.619 kb on + strandat 3563.619 kb on + strandat 3563.619 kb on + strandat 3563.619 kb on + strandat 3563.619 kb on + strandat 3563.620 kb on - strandat 3563.620 kb on - strandat 3563.620 kb on - strandat 3564.104 kb on + strand, within Ga0059261_3438at 3564.104 kb on + strand, within Ga0059261_3438at 3564.104 kb on + strand, within Ga0059261_3438at 3564.104 kb on + strand, within Ga0059261_3438at 3564.104 kb on + strand, within Ga0059261_3438at 3564.104 kb on + strand, within Ga0059261_3438at 3564.105 kb on - strand, within Ga0059261_3438at 3564.105 kb on - strand, within Ga0059261_3438at 3564.216 kb on + strand, within Ga0059261_3438at 3564.217 kb on - strandat 3564.217 kb on - strand, within Ga0059261_3438at 3564.263 kb on + strand, within Ga0059261_3438at 3564.264 kb on - strand, within Ga0059261_3438

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.12 mg/ml
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3,562,336 + Ga0059261_3435 0.71 -0.4
3,562,337 - Ga0059261_3435 0.71 -1.0
3,562,338 + Ga0059261_3435 0.71 +0.7
3,562,338 + Ga0059261_3435 0.71 +0.5
3,562,338 + Ga0059261_3435 0.71 -0.1
3,562,338 + Ga0059261_3435 0.71 -0.5
3,562,338 + Ga0059261_3435 0.71 -0.7
3,562,338 + Ga0059261_3435 0.71 +0.7
3,562,338 + Ga0059261_3435 0.71 -0.1
3,562,338 + Ga0059261_3435 0.71 -0.2
3,562,338 + Ga0059261_3435 0.71 +0.5
3,562,338 + Ga0059261_3435 0.71 +0.1
3,562,339 - Ga0059261_3435 0.72 -0.5
3,562,339 - Ga0059261_3435 0.72 +0.9
3,562,339 - Ga0059261_3435 0.72 +0.1
3,562,339 - Ga0059261_3435 0.72 +0.7
3,562,339 - Ga0059261_3435 0.72 +0.4
3,562,339 - +0.5
3,562,339 - Ga0059261_3435 0.72 -0.5
3,562,339 - +1.5
3,562,339 - Ga0059261_3435 0.72 +0.6
3,562,339 - Ga0059261_3435 0.72 +0.5
3,562,339 - Ga0059261_3435 0.72 -0.2
3,562,339 - Ga0059261_3435 0.72 +0.2
3,562,339 - Ga0059261_3435 0.72 +0.4
3,562,339 - Ga0059261_3435 0.72 +0.5
3,562,510 - +0.0
3,562,704 + Ga0059261_3436 0.27 +0.9
3,562,705 - Ga0059261_3436 0.27 -0.8
3,562,727 + Ga0059261_3436 0.32 +0.4
3,562,727 + Ga0059261_3436 0.32 -0.1
3,562,727 + Ga0059261_3436 0.32 +0.1
3,562,727 + Ga0059261_3436 0.32 -0.1
3,562,727 + Ga0059261_3436 0.32 +0.3
3,562,727 + Ga0059261_3436 0.32 +0.5
3,562,727 + Ga0059261_3436 0.32 +0.0
3,562,727 + Ga0059261_3436 0.32 +0.7
3,562,727 + Ga0059261_3436 0.32 +0.5
3,562,728 - Ga0059261_3436 0.32 -0.5
3,562,728 - Ga0059261_3436 0.32 -0.6
3,562,728 - Ga0059261_3436 0.32 -1.0
3,562,728 - Ga0059261_3436 0.32 +0.5
3,562,728 - Ga0059261_3436 0.32 -0.8
3,562,841 + Ga0059261_3436 0.56 +1.2
3,562,841 + +0.2
3,562,841 + Ga0059261_3436 0.56 +0.5
3,562,841 + Ga0059261_3436 0.56 -0.4
3,562,841 + Ga0059261_3436 0.56 -1.4
3,562,841 + Ga0059261_3436 0.56 +0.1
3,562,841 + Ga0059261_3436 0.56 +1.2
3,562,841 + Ga0059261_3436 0.56 -0.8
3,562,841 + Ga0059261_3436 0.56 -0.4
3,562,842 - Ga0059261_3436 0.56 -0.3
3,562,842 - Ga0059261_3436 0.56 -0.6
3,562,842 - Ga0059261_3436 0.56 -0.2
3,562,842 - Ga0059261_3436 0.56 -1.9
3,562,842 - Ga0059261_3436 0.56 -0.7
3,562,842 - Ga0059261_3436 0.56 -0.0
3,562,842 - Ga0059261_3436 0.56 +0.3
3,562,842 - Ga0059261_3436 0.56 -0.2
3,563,263 + Ga0059261_3437 0.19 -0.9
3,563,576 + +0.2
3,563,577 - -0.2
3,563,595 + +0.6
3,563,596 - -0.1
3,563,596 - -0.4
3,563,596 - -0.3
3,563,606 + +0.7
3,563,606 + +2.0
3,563,606 + -1.0
3,563,606 + -0.8
3,563,606 + -0.1
3,563,606 + -0.4
3,563,606 + -0.9
3,563,607 - -0.3
3,563,607 - -0.2
3,563,607 - +0.8
3,563,619 + -0.4
3,563,619 + +0.5
3,563,619 + -0.1
3,563,619 + +0.3
3,563,619 + +0.9
3,563,619 + +1.5
3,563,619 + +0.7
3,563,619 + +1.2
3,563,620 - +0.0
3,563,620 - -0.2
3,563,620 - -0.1
3,564,104 + Ga0059261_3438 0.33 +0.3
3,564,104 + Ga0059261_3438 0.33 +0.7
3,564,104 + Ga0059261_3438 0.33 -0.4
3,564,104 + Ga0059261_3438 0.33 +0.3
3,564,104 + Ga0059261_3438 0.33 -0.3
3,564,104 + Ga0059261_3438 0.33 +0.1
3,564,105 - Ga0059261_3438 0.33 +0.0
3,564,105 - Ga0059261_3438 0.33 -0.4
3,564,216 + Ga0059261_3438 0.42 -0.4
3,564,217 - +0.2
3,564,217 - Ga0059261_3438 0.42 -0.9
3,564,263 + Ga0059261_3438 0.45 -1.0
3,564,264 - Ga0059261_3438 0.45 +0.1

Or see this region's nucleotide sequence