Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2120

Experiment: Bacitracin 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2118 and Ga0059261_2119 are separated by 2 nucleotidesGa0059261_2119 and Ga0059261_2120 are separated by 5 nucleotidesGa0059261_2120 and Ga0059261_2121 overlap by 67 nucleotides Ga0059261_2118: Ga0059261_2118 - flagellar motor stator protein MotA, at 2,232,475 to 2,233,338 _2118 Ga0059261_2119: Ga0059261_2119 - Flagellar motor protein, at 2,233,341 to 2,234,246 _2119 Ga0059261_2120: Ga0059261_2120 - hypothetical protein, at 2,234,252 to 2,234,434 _2120 Ga0059261_2121: Ga0059261_2121 - hypothetical protein, at 2,234,368 to 2,236,869 _2121 Position (kb) 2234 2235Strain fitness (log2 ratio) -1 0 1 2at 2233.332 kb on + strandat 2233.336 kb on + strandat 2233.336 kb on + strandat 2233.336 kb on + strandat 2233.336 kb on + strandat 2233.336 kb on + strandat 2233.336 kb on + strandat 2233.336 kb on + strandat 2233.336 kb on + strandat 2233.336 kb on + strandat 2233.336 kb on + strandat 2233.336 kb on + strandat 2233.336 kb on + strandat 2233.336 kb on + strandat 2233.336 kb on + strandat 2233.336 kb on + strandat 2233.336 kb on + strandat 2233.336 kb on + strandat 2233.336 kb on + strandat 2233.336 kb on + strandat 2233.336 kb on + strandat 2233.336 kb on + strandat 2233.336 kb on + strandat 2233.336 kb on + strandat 2233.336 kb on + strandat 2233.337 kb on - strandat 2233.337 kb on - strandat 2233.337 kb on - strandat 2233.337 kb on - strandat 2233.337 kb on - strandat 2233.337 kb on - strandat 2233.337 kb on - strandat 2233.337 kb on - strandat 2233.337 kb on - strandat 2233.337 kb on - strandat 2233.337 kb on - strandat 2233.337 kb on - strandat 2233.337 kb on - strandat 2233.337 kb on - strandat 2233.337 kb on - strandat 2233.337 kb on - strandat 2233.337 kb on - strandat 2233.337 kb on - strandat 2233.337 kb on - strandat 2233.337 kb on - strandat 2233.337 kb on - strandat 2233.337 kb on - strandat 2233.337 kb on - strandat 2233.449 kb on + strand, within Ga0059261_2119at 2233.449 kb on + strand, within Ga0059261_2119at 2233.449 kb on + strandat 2233.449 kb on + strand, within Ga0059261_2119at 2233.450 kb on - strand, within Ga0059261_2119at 2233.542 kb on + strand, within Ga0059261_2119at 2233.543 kb on - strand, within Ga0059261_2119at 2233.543 kb on - strand, within Ga0059261_2119at 2233.632 kb on + strand, within Ga0059261_2119at 2233.632 kb on + strand, within Ga0059261_2119at 2233.632 kb on + strand, within Ga0059261_2119at 2233.633 kb on - strand, within Ga0059261_2119at 2233.899 kb on + strand, within Ga0059261_2119at 2233.899 kb on + strand, within Ga0059261_2119at 2234.028 kb on + strand, within Ga0059261_2119at 2234.220 kb on + strandat 2234.251 kb on + strandat 2234.251 kb on + strandat 2234.252 kb on - strandat 2234.252 kb on - strandat 2234.252 kb on - strandat 2234.299 kb on + strand, within Ga0059261_2120at 2234.299 kb on + strand, within Ga0059261_2120at 2234.299 kb on + strand, within Ga0059261_2120at 2234.299 kb on + strand, within Ga0059261_2120at 2234.299 kb on + strand, within Ga0059261_2120at 2234.299 kb on + strand, within Ga0059261_2120at 2234.299 kb on + strand, within Ga0059261_2120at 2234.299 kb on + strand, within Ga0059261_2120at 2234.299 kb on + strand, within Ga0059261_2120at 2234.300 kb on - strand, within Ga0059261_2120at 2234.300 kb on - strand, within Ga0059261_2120at 2234.386 kb on + strandat 2234.387 kb on - strandat 2234.387 kb on - strandat 2234.387 kb on - strandat 2234.435 kb on + strandat 2234.435 kb on + strandat 2234.435 kb on + strandat 2234.435 kb on + strandat 2234.435 kb on + strandat 2234.436 kb on - strandat 2234.436 kb on - strandat 2234.436 kb on - strandat 2234.436 kb on - strandat 2234.436 kb on - strandat 2235.272 kb on + strand, within Ga0059261_2121at 2235.273 kb on - strand, within Ga0059261_2121at 2235.273 kb on - strand, within Ga0059261_2121

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.12 mg/ml
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2,233,332 + +0.1
2,233,336 + -0.0
2,233,336 + +1.2
2,233,336 + -0.2
2,233,336 + -0.6
2,233,336 + -0.2
2,233,336 + +0.8
2,233,336 + -1.7
2,233,336 + +0.2
2,233,336 + -0.5
2,233,336 + -0.1
2,233,336 + +0.8
2,233,336 + -0.3
2,233,336 + +1.0
2,233,336 + +0.8
2,233,336 + -1.1
2,233,336 + +1.5
2,233,336 + +1.1
2,233,336 + -0.8
2,233,336 + +1.8
2,233,336 + -0.1
2,233,336 + -0.6
2,233,336 + -0.2
2,233,336 + +0.8
2,233,336 + +0.3
2,233,337 - -0.5
2,233,337 - -0.6
2,233,337 - -0.2
2,233,337 - +0.0
2,233,337 - -0.1
2,233,337 - +0.7
2,233,337 - +0.1
2,233,337 - +2.2
2,233,337 - -0.9
2,233,337 - -0.1
2,233,337 - +0.2
2,233,337 - +0.4
2,233,337 - -0.6
2,233,337 - -0.6
2,233,337 - -1.1
2,233,337 - +0.0
2,233,337 - -0.1
2,233,337 - -1.5
2,233,337 - +0.2
2,233,337 - -0.1
2,233,337 - +0.2
2,233,337 - -0.1
2,233,337 - +0.1
2,233,449 + Ga0059261_2119 0.12 +0.4
2,233,449 + Ga0059261_2119 0.12 +0.5
2,233,449 + +1.8
2,233,449 + Ga0059261_2119 0.12 -0.5
2,233,450 - Ga0059261_2119 0.12 -0.6
2,233,542 + Ga0059261_2119 0.22 -0.4
2,233,543 - Ga0059261_2119 0.22 -0.6
2,233,543 - Ga0059261_2119 0.22 -0.1
2,233,632 + Ga0059261_2119 0.32 -0.3
2,233,632 + Ga0059261_2119 0.32 -1.0
2,233,632 + Ga0059261_2119 0.32 +0.8
2,233,633 - Ga0059261_2119 0.32 +1.1
2,233,899 + Ga0059261_2119 0.62 +0.0
2,233,899 + Ga0059261_2119 0.62 -0.0
2,234,028 + Ga0059261_2119 0.76 -0.1
2,234,220 + -0.7
2,234,251 + -0.7
2,234,251 + -0.3
2,234,252 - +1.1
2,234,252 - +0.7
2,234,252 - -0.0
2,234,299 + Ga0059261_2120 0.26 -1.2
2,234,299 + Ga0059261_2120 0.26 -1.4
2,234,299 + Ga0059261_2120 0.26 +0.9
2,234,299 + Ga0059261_2120 0.26 -0.8
2,234,299 + Ga0059261_2120 0.26 -0.9
2,234,299 + Ga0059261_2120 0.26 -0.2
2,234,299 + Ga0059261_2120 0.26 +0.8
2,234,299 + Ga0059261_2120 0.26 -0.1
2,234,299 + Ga0059261_2120 0.26 -0.9
2,234,300 - Ga0059261_2120 0.26 -0.2
2,234,300 - Ga0059261_2120 0.26 -0.6
2,234,386 + +0.2
2,234,387 - +1.2
2,234,387 - -0.2
2,234,387 - -0.6
2,234,435 + +0.2
2,234,435 + -0.9
2,234,435 + -0.4
2,234,435 + -0.4
2,234,435 + -1.0
2,234,436 - -0.7
2,234,436 - +1.0
2,234,436 - -0.0
2,234,436 - -1.0
2,234,436 - +1.3
2,235,272 + Ga0059261_2121 0.36 -0.6
2,235,273 - Ga0059261_2121 0.36 -0.3
2,235,273 - Ga0059261_2121 0.36 +0.2

Or see this region's nucleotide sequence