Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1080

Experiment: Bacitracin 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1079 and Ga0059261_1080 are separated by 3 nucleotidesGa0059261_1080 and Ga0059261_1081 are separated by 36 nucleotides Ga0059261_1079: Ga0059261_1079 - Chemotaxis protein histidine kinase and related kinases, at 1,106,225 to 1,108,204 _1079 Ga0059261_1080: Ga0059261_1080 - Chemotaxis signal transduction protein, at 1,108,208 to 1,108,729 _1080 Ga0059261_1081: Ga0059261_1081 - Methyl-accepting chemotaxis protein, at 1,108,766 to 1,110,565 _1081 Position (kb) 1108 1109Strain fitness (log2 ratio) -3 -2 -1 0 1at 1107.320 kb on - strand, within Ga0059261_1079at 1107.320 kb on - strand, within Ga0059261_1079at 1107.339 kb on + strand, within Ga0059261_1079at 1107.340 kb on - strand, within Ga0059261_1079at 1107.340 kb on - strand, within Ga0059261_1079at 1107.815 kb on + strand, within Ga0059261_1079at 1107.815 kb on + strand, within Ga0059261_1079at 1107.816 kb on - strand, within Ga0059261_1079at 1107.816 kb on - strand, within Ga0059261_1079at 1107.816 kb on - strand, within Ga0059261_1079at 1107.816 kb on - strand, within Ga0059261_1079at 1107.816 kb on - strand, within Ga0059261_1079at 1107.855 kb on + strand, within Ga0059261_1079at 1107.856 kb on - strand, within Ga0059261_1079at 1107.861 kb on + strand, within Ga0059261_1079at 1107.862 kb on - strand, within Ga0059261_1079at 1108.219 kb on + strandat 1108.219 kb on + strandat 1108.219 kb on + strandat 1108.219 kb on + strandat 1108.220 kb on - strandat 1108.220 kb on - strandat 1108.220 kb on - strandat 1108.220 kb on - strandat 1108.442 kb on - strand, within Ga0059261_1080at 1108.442 kb on - strand, within Ga0059261_1080at 1108.607 kb on + strand, within Ga0059261_1080at 1108.607 kb on + strand, within Ga0059261_1080at 1108.608 kb on - strand, within Ga0059261_1080at 1108.608 kb on - strand, within Ga0059261_1080at 1108.779 kb on + strandat 1108.780 kb on - strandat 1108.957 kb on + strand, within Ga0059261_1081at 1108.957 kb on + strand, within Ga0059261_1081at 1108.957 kb on + strand, within Ga0059261_1081at 1108.958 kb on - strand, within Ga0059261_1081at 1108.958 kb on - strand, within Ga0059261_1081at 1108.958 kb on - strand, within Ga0059261_1081at 1109.126 kb on + strand, within Ga0059261_1081at 1109.126 kb on + strand, within Ga0059261_1081at 1109.126 kb on + strand, within Ga0059261_1081at 1109.126 kb on + strand, within Ga0059261_1081at 1109.126 kb on + strand, within Ga0059261_1081at 1109.127 kb on - strand, within Ga0059261_1081at 1109.127 kb on - strand, within Ga0059261_1081at 1109.127 kb on - strand, within Ga0059261_1081at 1109.127 kb on - strand, within Ga0059261_1081at 1109.127 kb on - strand, within Ga0059261_1081at 1109.296 kb on + strand, within Ga0059261_1081at 1109.296 kb on + strand, within Ga0059261_1081at 1109.296 kb on + strandat 1109.296 kb on + strand, within Ga0059261_1081at 1109.296 kb on + strand, within Ga0059261_1081at 1109.297 kb on - strand, within Ga0059261_1081at 1109.297 kb on - strand, within Ga0059261_1081at 1109.306 kb on + strand, within Ga0059261_1081at 1109.306 kb on + strand, within Ga0059261_1081at 1109.306 kb on + strand, within Ga0059261_1081at 1109.306 kb on + strand, within Ga0059261_1081at 1109.307 kb on - strand, within Ga0059261_1081at 1109.307 kb on - strand, within Ga0059261_1081at 1109.504 kb on - strand, within Ga0059261_1081at 1109.611 kb on - strand, within Ga0059261_1081at 1109.611 kb on - strand, within Ga0059261_1081at 1109.611 kb on - strand, within Ga0059261_1081at 1109.611 kb on - strand, within Ga0059261_1081at 1109.611 kb on - strand, within Ga0059261_1081at 1109.611 kb on - strand, within Ga0059261_1081

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.12 mg/ml
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1,107,320 - Ga0059261_1079 0.55 -1.0
1,107,320 - Ga0059261_1079 0.55 +0.0
1,107,339 + Ga0059261_1079 0.56 +0.5
1,107,340 - Ga0059261_1079 0.56 -1.1
1,107,340 - Ga0059261_1079 0.56 -0.3
1,107,815 + Ga0059261_1079 0.80 -0.7
1,107,815 + Ga0059261_1079 0.80 -0.3
1,107,816 - Ga0059261_1079 0.80 -0.2
1,107,816 - Ga0059261_1079 0.80 +0.3
1,107,816 - Ga0059261_1079 0.80 +0.3
1,107,816 - Ga0059261_1079 0.80 +0.2
1,107,816 - Ga0059261_1079 0.80 +0.9
1,107,855 + Ga0059261_1079 0.82 -0.2
1,107,856 - Ga0059261_1079 0.82 -0.1
1,107,861 + Ga0059261_1079 0.83 -1.2
1,107,862 - Ga0059261_1079 0.83 +0.0
1,108,219 + +0.2
1,108,219 + -0.2
1,108,219 + +0.2
1,108,219 + -1.3
1,108,220 - +0.3
1,108,220 - +0.8
1,108,220 - -0.2
1,108,220 - +1.2
1,108,442 - Ga0059261_1080 0.45 -0.4
1,108,442 - Ga0059261_1080 0.45 -0.6
1,108,607 + Ga0059261_1080 0.76 +0.1
1,108,607 + Ga0059261_1080 0.76 +0.0
1,108,608 - Ga0059261_1080 0.77 -1.5
1,108,608 - Ga0059261_1080 0.77 -1.5
1,108,779 + -0.4
1,108,780 - -1.5
1,108,957 + Ga0059261_1081 0.11 -0.2
1,108,957 + Ga0059261_1081 0.11 +0.7
1,108,957 + Ga0059261_1081 0.11 -0.1
1,108,958 - Ga0059261_1081 0.11 -0.8
1,108,958 - Ga0059261_1081 0.11 -0.1
1,108,958 - Ga0059261_1081 0.11 -0.3
1,109,126 + Ga0059261_1081 0.20 +0.3
1,109,126 + Ga0059261_1081 0.20 +0.5
1,109,126 + Ga0059261_1081 0.20 +0.1
1,109,126 + Ga0059261_1081 0.20 +0.1
1,109,126 + Ga0059261_1081 0.20 +0.3
1,109,127 - Ga0059261_1081 0.20 -0.2
1,109,127 - Ga0059261_1081 0.20 -0.2
1,109,127 - Ga0059261_1081 0.20 -0.4
1,109,127 - Ga0059261_1081 0.20 +0.5
1,109,127 - Ga0059261_1081 0.20 +0.3
1,109,296 + Ga0059261_1081 0.29 -0.1
1,109,296 + Ga0059261_1081 0.29 +1.1
1,109,296 + -0.7
1,109,296 + Ga0059261_1081 0.29 -0.2
1,109,296 + Ga0059261_1081 0.29 -3.1
1,109,297 - Ga0059261_1081 0.29 +0.2
1,109,297 - Ga0059261_1081 0.29 -0.6
1,109,306 + Ga0059261_1081 0.30 +0.2
1,109,306 + Ga0059261_1081 0.30 +0.4
1,109,306 + Ga0059261_1081 0.30 -0.3
1,109,306 + Ga0059261_1081 0.30 +0.3
1,109,307 - Ga0059261_1081 0.30 -0.9
1,109,307 - Ga0059261_1081 0.30 -0.6
1,109,504 - Ga0059261_1081 0.41 -0.0
1,109,611 - Ga0059261_1081 0.47 -0.4
1,109,611 - Ga0059261_1081 0.47 +0.9
1,109,611 - Ga0059261_1081 0.47 +0.2
1,109,611 - Ga0059261_1081 0.47 -0.3
1,109,611 - Ga0059261_1081 0.47 -0.5
1,109,611 - Ga0059261_1081 0.47 -0.3

Or see this region's nucleotide sequence