Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0951

Experiment: Bacitracin 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0950 and Ga0059261_0951 are separated by 36 nucleotidesGa0059261_0951 and Ga0059261_0952 are separated by 19 nucleotides Ga0059261_0950: Ga0059261_0950 - Uncharacterized protein conserved in bacteria (DUF2336), at 980,553 to 981,644 _0950 Ga0059261_0951: Ga0059261_0951 - hypothetical protein, at 981,681 to 982,850 _0951 Ga0059261_0952: Ga0059261_0952 - Uncharacterized protein conserved in bacteria, at 982,870 to 984,066 _0952 Position (kb) 981 982 983Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 981.076 kb on - strand, within Ga0059261_0950at 981.085 kb on + strand, within Ga0059261_0950at 981.086 kb on - strand, within Ga0059261_0950at 981.086 kb on - strand, within Ga0059261_0950at 981.086 kb on - strand, within Ga0059261_0950at 981.111 kb on - strand, within Ga0059261_0950at 981.375 kb on - strand, within Ga0059261_0950at 981.617 kb on + strandat 981.617 kb on + strandat 981.617 kb on + strandat 981.617 kb on + strandat 981.618 kb on - strandat 981.618 kb on - strandat 981.618 kb on - strandat 981.618 kb on - strandat 981.618 kb on - strandat 981.618 kb on - strandat 981.682 kb on + strandat 981.682 kb on + strandat 981.682 kb on + strandat 981.682 kb on + strandat 981.683 kb on - strandat 981.683 kb on - strandat 981.683 kb on - strandat 981.683 kb on - strandat 981.734 kb on - strandat 981.734 kb on - strandat 981.802 kb on + strand, within Ga0059261_0951at 981.802 kb on + strandat 981.803 kb on - strand, within Ga0059261_0951at 981.803 kb on - strand, within Ga0059261_0951at 981.803 kb on - strand, within Ga0059261_0951at 981.803 kb on - strand, within Ga0059261_0951at 982.329 kb on + strand, within Ga0059261_0951at 982.329 kb on + strandat 982.330 kb on - strand, within Ga0059261_0951at 982.330 kb on - strand, within Ga0059261_0951at 982.384 kb on + strand, within Ga0059261_0951at 982.384 kb on + strand, within Ga0059261_0951at 982.384 kb on + strand, within Ga0059261_0951at 982.384 kb on + strand, within Ga0059261_0951at 982.384 kb on + strand, within Ga0059261_0951at 982.384 kb on + strand, within Ga0059261_0951at 982.384 kb on + strand, within Ga0059261_0951at 982.385 kb on - strand, within Ga0059261_0951at 982.385 kb on - strand, within Ga0059261_0951at 982.751 kb on - strandat 982.871 kb on + strandat 982.871 kb on + strandat 982.871 kb on + strandat 982.871 kb on + strandat 982.871 kb on + strandat 982.871 kb on + strandat 982.872 kb on - strandat 982.872 kb on - strandat 982.874 kb on + strandat 982.875 kb on - strandat 983.026 kb on + strand, within Ga0059261_0952at 983.027 kb on + strand, within Ga0059261_0952at 983.033 kb on + strand, within Ga0059261_0952at 983.057 kb on + strand, within Ga0059261_0952at 983.057 kb on + strand, within Ga0059261_0952at 983.057 kb on + strand, within Ga0059261_0952at 983.057 kb on + strand, within Ga0059261_0952at 983.058 kb on - strand, within Ga0059261_0952at 983.058 kb on - strand, within Ga0059261_0952at 983.132 kb on + strand, within Ga0059261_0952at 983.372 kb on + strand, within Ga0059261_0952at 983.385 kb on + strand, within Ga0059261_0952at 983.386 kb on - strand, within Ga0059261_0952at 983.386 kb on - strand, within Ga0059261_0952at 983.696 kb on + strand, within Ga0059261_0952at 983.696 kb on + strand, within Ga0059261_0952at 983.696 kb on + strand, within Ga0059261_0952at 983.696 kb on + strand, within Ga0059261_0952at 983.696 kb on + strand, within Ga0059261_0952at 983.696 kb on + strand, within Ga0059261_0952at 983.696 kb on + strand, within Ga0059261_0952at 983.696 kb on + strand, within Ga0059261_0952at 983.696 kb on + strand, within Ga0059261_0952at 983.696 kb on + strand, within Ga0059261_0952at 983.697 kb on - strand, within Ga0059261_0952at 983.697 kb on - strand, within Ga0059261_0952at 983.697 kb on - strand, within Ga0059261_0952at 983.697 kb on - strand, within Ga0059261_0952at 983.697 kb on - strand, within Ga0059261_0952at 983.697 kb on - strand, within Ga0059261_0952at 983.697 kb on - strand, within Ga0059261_0952at 983.697 kb on - strand, within Ga0059261_0952at 983.697 kb on - strand, within Ga0059261_0952at 983.697 kb on - strand, within Ga0059261_0952at 983.714 kb on + strand, within Ga0059261_0952at 983.714 kb on + strand, within Ga0059261_0952at 983.714 kb on + strandat 983.714 kb on + strand, within Ga0059261_0952at 983.714 kb on + strand, within Ga0059261_0952at 983.714 kb on + strand, within Ga0059261_0952at 983.714 kb on + strand, within Ga0059261_0952at 983.714 kb on + strand, within Ga0059261_0952at 983.714 kb on + strand, within Ga0059261_0952at 983.715 kb on - strand, within Ga0059261_0952at 983.715 kb on - strand, within Ga0059261_0952at 983.715 kb on - strand, within Ga0059261_0952at 983.715 kb on - strand, within Ga0059261_0952at 983.715 kb on - strand, within Ga0059261_0952at 983.720 kb on + strand, within Ga0059261_0952at 983.720 kb on + strand, within Ga0059261_0952at 983.720 kb on + strand, within Ga0059261_0952at 983.720 kb on + strand, within Ga0059261_0952at 983.720 kb on + strand, within Ga0059261_0952at 983.720 kb on + strand, within Ga0059261_0952at 983.720 kb on + strand, within Ga0059261_0952at 983.720 kb on + strand, within Ga0059261_0952at 983.720 kb on + strand, within Ga0059261_0952at 983.720 kb on + strand, within Ga0059261_0952at 983.720 kb on + strand, within Ga0059261_0952at 983.720 kb on + strand, within Ga0059261_0952at 983.720 kb on + strand, within Ga0059261_0952at 983.720 kb on + strand, within Ga0059261_0952at 983.720 kb on + strand, within Ga0059261_0952at 983.720 kb on + strand, within Ga0059261_0952at 983.721 kb on - strand, within Ga0059261_0952at 983.721 kb on - strand, within Ga0059261_0952at 983.721 kb on - strand, within Ga0059261_0952at 983.721 kb on - strand, within Ga0059261_0952at 983.721 kb on - strand, within Ga0059261_0952at 983.721 kb on - strand, within Ga0059261_0952at 983.721 kb on - strand, within Ga0059261_0952at 983.721 kb on - strand, within Ga0059261_0952at 983.721 kb on - strand, within Ga0059261_0952at 983.721 kb on - strand, within Ga0059261_0952at 983.721 kb on - strand, within Ga0059261_0952at 983.721 kb on - strand, within Ga0059261_0952at 983.721 kb on - strand, within Ga0059261_0952at 983.808 kb on - strand, within Ga0059261_0952at 983.808 kb on - strand, within Ga0059261_0952at 983.831 kb on + strand, within Ga0059261_0952at 983.832 kb on - strand, within Ga0059261_0952at 983.832 kb on - strand, within Ga0059261_0952at 983.844 kb on + strand, within Ga0059261_0952at 983.844 kb on + strand, within Ga0059261_0952at 983.846 kb on + strand, within Ga0059261_0952at 983.846 kb on + strand, within Ga0059261_0952at 983.846 kb on + strand, within Ga0059261_0952at 983.846 kb on + strand, within Ga0059261_0952at 983.846 kb on + strand, within Ga0059261_0952at 983.847 kb on - strand, within Ga0059261_0952at 983.847 kb on - strand, within Ga0059261_0952

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.12 mg/ml
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981,076 - Ga0059261_0950 0.48 -1.3
981,085 + Ga0059261_0950 0.49 -1.6
981,086 - Ga0059261_0950 0.49 -3.6
981,086 - Ga0059261_0950 0.49 -0.9
981,086 - Ga0059261_0950 0.49 -1.1
981,111 - Ga0059261_0950 0.51 +0.3
981,375 - Ga0059261_0950 0.75 -0.7
981,617 + -2.2
981,617 + -0.4
981,617 + -1.3
981,617 + -1.5
981,618 - -0.9
981,618 - -1.0
981,618 - -0.4
981,618 - -0.0
981,618 - +0.1
981,618 - -0.8
981,682 + -0.4
981,682 + -0.9
981,682 + -0.3
981,682 + -0.3
981,683 - -0.6
981,683 - +0.1
981,683 - -0.7
981,683 - +0.6
981,734 - -1.5
981,734 - -2.7
981,802 + Ga0059261_0951 0.10 -0.6
981,802 + +0.4
981,803 - Ga0059261_0951 0.10 -1.2
981,803 - Ga0059261_0951 0.10 -0.6
981,803 - Ga0059261_0951 0.10 -1.6
981,803 - Ga0059261_0951 0.10 +0.0
982,329 + Ga0059261_0951 0.55 -0.6
982,329 + -0.9
982,330 - Ga0059261_0951 0.55 -0.3
982,330 - Ga0059261_0951 0.55 -0.7
982,384 + Ga0059261_0951 0.60 +0.2
982,384 + Ga0059261_0951 0.60 +0.2
982,384 + Ga0059261_0951 0.60 -0.7
982,384 + Ga0059261_0951 0.60 -0.8
982,384 + Ga0059261_0951 0.60 -0.7
982,384 + Ga0059261_0951 0.60 -1.5
982,384 + Ga0059261_0951 0.60 -1.7
982,385 - Ga0059261_0951 0.60 +0.0
982,385 - Ga0059261_0951 0.60 -1.5
982,751 - -0.6
982,871 + -1.6
982,871 + -1.2
982,871 + -1.4
982,871 + -2.0
982,871 + -0.2
982,871 + +0.1
982,872 - -1.0
982,872 - -0.3
982,874 + -0.5
982,875 - -0.2
983,026 + Ga0059261_0952 0.13 +0.4
983,027 + Ga0059261_0952 0.13 +0.2
983,033 + Ga0059261_0952 0.14 -0.7
983,057 + Ga0059261_0952 0.16 -0.5
983,057 + Ga0059261_0952 0.16 -0.2
983,057 + Ga0059261_0952 0.16 +0.4
983,057 + Ga0059261_0952 0.16 -0.9
983,058 - Ga0059261_0952 0.16 -0.2
983,058 - Ga0059261_0952 0.16 -0.0
983,132 + Ga0059261_0952 0.22 -1.3
983,372 + Ga0059261_0952 0.42 +1.8
983,385 + Ga0059261_0952 0.43 +1.4
983,386 - Ga0059261_0952 0.43 -0.6
983,386 - Ga0059261_0952 0.43 -0.2
983,696 + Ga0059261_0952 0.69 -0.8
983,696 + Ga0059261_0952 0.69 -0.2
983,696 + Ga0059261_0952 0.69 -0.9
983,696 + Ga0059261_0952 0.69 -0.0
983,696 + Ga0059261_0952 0.69 -0.2
983,696 + Ga0059261_0952 0.69 +0.3
983,696 + Ga0059261_0952 0.69 -0.4
983,696 + Ga0059261_0952 0.69 +0.9
983,696 + Ga0059261_0952 0.69 -0.5
983,696 + Ga0059261_0952 0.69 -0.4
983,697 - Ga0059261_0952 0.69 -0.1
983,697 - Ga0059261_0952 0.69 -1.6
983,697 - Ga0059261_0952 0.69 +0.4
983,697 - Ga0059261_0952 0.69 -0.3
983,697 - Ga0059261_0952 0.69 +0.2
983,697 - Ga0059261_0952 0.69 -0.9
983,697 - Ga0059261_0952 0.69 +0.1
983,697 - Ga0059261_0952 0.69 +0.2
983,697 - Ga0059261_0952 0.69 +0.8
983,697 - Ga0059261_0952 0.69 +0.4
983,714 + Ga0059261_0952 0.71 +0.5
983,714 + Ga0059261_0952 0.71 -0.2
983,714 + +0.8
983,714 + Ga0059261_0952 0.71 -1.2
983,714 + Ga0059261_0952 0.71 +0.0
983,714 + Ga0059261_0952 0.71 -1.7
983,714 + Ga0059261_0952 0.71 -0.4
983,714 + Ga0059261_0952 0.71 -0.2
983,714 + Ga0059261_0952 0.71 +0.9
983,715 - Ga0059261_0952 0.71 +0.6
983,715 - Ga0059261_0952 0.71 -0.1
983,715 - Ga0059261_0952 0.71 -0.2
983,715 - Ga0059261_0952 0.71 -0.1
983,715 - Ga0059261_0952 0.71 -0.4
983,720 + Ga0059261_0952 0.71 +0.2
983,720 + Ga0059261_0952 0.71 -0.9
983,720 + Ga0059261_0952 0.71 -0.2
983,720 + Ga0059261_0952 0.71 -0.5
983,720 + Ga0059261_0952 0.71 -0.3
983,720 + Ga0059261_0952 0.71 -0.2
983,720 + Ga0059261_0952 0.71 +0.0
983,720 + Ga0059261_0952 0.71 +0.0
983,720 + Ga0059261_0952 0.71 -0.3
983,720 + Ga0059261_0952 0.71 -0.3
983,720 + Ga0059261_0952 0.71 +0.2
983,720 + Ga0059261_0952 0.71 -0.2
983,720 + Ga0059261_0952 0.71 -0.1
983,720 + Ga0059261_0952 0.71 -0.0
983,720 + Ga0059261_0952 0.71 +0.3
983,720 + Ga0059261_0952 0.71 -0.5
983,721 - Ga0059261_0952 0.71 -0.2
983,721 - Ga0059261_0952 0.71 +0.0
983,721 - Ga0059261_0952 0.71 -0.6
983,721 - Ga0059261_0952 0.71 -0.5
983,721 - Ga0059261_0952 0.71 -0.8
983,721 - Ga0059261_0952 0.71 +0.1
983,721 - Ga0059261_0952 0.71 -0.1
983,721 - Ga0059261_0952 0.71 -0.5
983,721 - Ga0059261_0952 0.71 +0.3
983,721 - Ga0059261_0952 0.71 +0.2
983,721 - Ga0059261_0952 0.71 +0.4
983,721 - Ga0059261_0952 0.71 +0.3
983,721 - Ga0059261_0952 0.71 -0.1
983,808 - Ga0059261_0952 0.78 +0.0
983,808 - Ga0059261_0952 0.78 -0.6
983,831 + Ga0059261_0952 0.80 +0.6
983,832 - Ga0059261_0952 0.80 +0.1
983,832 - Ga0059261_0952 0.80 +0.1
983,844 + Ga0059261_0952 0.81 +0.8
983,844 + Ga0059261_0952 0.81 +0.3
983,846 + Ga0059261_0952 0.82 +0.7
983,846 + Ga0059261_0952 0.82 -0.2
983,846 + Ga0059261_0952 0.82 -0.2
983,846 + Ga0059261_0952 0.82 -0.2
983,846 + Ga0059261_0952 0.82 -1.4
983,847 - Ga0059261_0952 0.82 +0.3
983,847 - Ga0059261_0952 0.82 -0.4

Or see this region's nucleotide sequence