Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0039

Experiment: Bacitracin 0.12 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0037 and Ga0059261_0038 are separated by 87 nucleotidesGa0059261_0038 and Ga0059261_0039 are separated by 180 nucleotidesGa0059261_0039 and Ga0059261_0040 are separated by 9 nucleotides Ga0059261_0037: Ga0059261_0037 - hypothetical protein, at 32,101 to 33,363 _0037 Ga0059261_0038: Ga0059261_0038 - Transcriptional regulators, at 33,451 to 33,915 _0038 Ga0059261_0039: Ga0059261_0039 - His Kinase A (phospho-acceptor) domain, at 34,096 to 35,907 _0039 Ga0059261_0040: Ga0059261_0040 - hypothetical protein, at 35,917 to 36,969 _0040 Position (kb) 34 35 36Strain fitness (log2 ratio) -2 -1 0 1at 33.143 kb on - strand, within Ga0059261_0037at 33.160 kb on + strand, within Ga0059261_0037at 33.161 kb on - strand, within Ga0059261_0037at 33.161 kb on - strand, within Ga0059261_0037at 33.624 kb on - strand, within Ga0059261_0038at 33.624 kb on - strand, within Ga0059261_0038at 33.726 kb on + strand, within Ga0059261_0038at 33.726 kb on + strand, within Ga0059261_0038at 33.727 kb on - strand, within Ga0059261_0038at 33.727 kb on - strand, within Ga0059261_0038at 33.727 kb on - strand, within Ga0059261_0038at 33.727 kb on - strand, within Ga0059261_0038at 33.727 kb on - strand, within Ga0059261_0038at 33.727 kb on - strand, within Ga0059261_0038at 33.728 kb on + strand, within Ga0059261_0038at 33.762 kb on - strand, within Ga0059261_0038at 33.968 kb on + strandat 33.969 kb on - strandat 33.969 kb on - strandat 34.275 kb on + strandat 34.414 kb on + strand, within Ga0059261_0039at 34.414 kb on + strand, within Ga0059261_0039at 34.414 kb on + strand, within Ga0059261_0039at 34.414 kb on + strandat 35.274 kb on + strand, within Ga0059261_0039at 35.274 kb on + strand, within Ga0059261_0039at 35.280 kb on + strand, within Ga0059261_0039at 35.280 kb on + strand, within Ga0059261_0039at 35.281 kb on - strand, within Ga0059261_0039at 35.676 kb on + strand, within Ga0059261_0039at 35.676 kb on + strand, within Ga0059261_0039at 35.676 kb on + strand, within Ga0059261_0039at 35.676 kb on + strand, within Ga0059261_0039at 35.676 kb on + strand, within Ga0059261_0039at 35.676 kb on + strand, within Ga0059261_0039at 35.676 kb on + strand, within Ga0059261_0039at 35.676 kb on + strand, within Ga0059261_0039at 35.677 kb on - strand, within Ga0059261_0039at 35.879 kb on + strandat 35.883 kb on + strandat 35.883 kb on + strandat 35.883 kb on + strandat 35.883 kb on + strandat 35.883 kb on + strandat 35.883 kb on + strandat 35.883 kb on + strandat 35.884 kb on - strandat 35.884 kb on - strandat 35.905 kb on + strandat 36.018 kb on + strandat 36.018 kb on + strandat 36.151 kb on + strand, within Ga0059261_0040at 36.151 kb on + strand, within Ga0059261_0040at 36.151 kb on + strand, within Ga0059261_0040at 36.151 kb on + strand, within Ga0059261_0040at 36.151 kb on + strand, within Ga0059261_0040at 36.151 kb on + strand, within Ga0059261_0040at 36.151 kb on + strand, within Ga0059261_0040at 36.151 kb on + strand, within Ga0059261_0040at 36.151 kb on + strand, within Ga0059261_0040at 36.151 kb on + strand, within Ga0059261_0040at 36.151 kb on + strand, within Ga0059261_0040at 36.151 kb on + strand, within Ga0059261_0040at 36.151 kb on + strand, within Ga0059261_0040at 36.151 kb on + strand, within Ga0059261_0040at 36.151 kb on + strand, within Ga0059261_0040at 36.151 kb on + strand, within Ga0059261_0040at 36.152 kb on - strandat 36.152 kb on - strand, within Ga0059261_0040at 36.152 kb on - strand, within Ga0059261_0040at 36.152 kb on - strand, within Ga0059261_0040at 36.152 kb on - strand, within Ga0059261_0040at 36.152 kb on - strand, within Ga0059261_0040at 36.152 kb on - strand, within Ga0059261_0040at 36.152 kb on - strand, within Ga0059261_0040at 36.152 kb on - strand, within Ga0059261_0040at 36.152 kb on - strand, within Ga0059261_0040at 36.152 kb on - strand, within Ga0059261_0040at 36.152 kb on - strand, within Ga0059261_0040at 36.152 kb on - strand, within Ga0059261_0040at 36.152 kb on - strand, within Ga0059261_0040at 36.152 kb on - strand, within Ga0059261_0040at 36.152 kb on - strand, within Ga0059261_0040at 36.152 kb on - strand, within Ga0059261_0040at 36.153 kb on + strand, within Ga0059261_0040at 36.153 kb on + strand, within Ga0059261_0040at 36.153 kb on + strand, within Ga0059261_0040at 36.153 kb on + strand, within Ga0059261_0040at 36.153 kb on + strand, within Ga0059261_0040at 36.153 kb on + strand, within Ga0059261_0040at 36.154 kb on - strand, within Ga0059261_0040at 36.168 kb on + strand, within Ga0059261_0040at 36.168 kb on + strand, within Ga0059261_0040at 36.451 kb on + strand, within Ga0059261_0040at 36.452 kb on - strand, within Ga0059261_0040at 36.452 kb on - strand, within Ga0059261_0040at 36.463 kb on - strand, within Ga0059261_0040at 36.482 kb on - strand, within Ga0059261_0040at 36.482 kb on - strand, within Ga0059261_0040at 36.482 kb on - strand, within Ga0059261_0040at 36.482 kb on - strand, within Ga0059261_0040at 36.487 kb on + strand, within Ga0059261_0040at 36.488 kb on - strand, within Ga0059261_0040at 36.583 kb on + strand, within Ga0059261_0040at 36.583 kb on + strand, within Ga0059261_0040at 36.617 kb on + strand, within Ga0059261_0040at 36.617 kb on + strand, within Ga0059261_0040at 36.617 kb on + strand, within Ga0059261_0040at 36.617 kb on + strand, within Ga0059261_0040at 36.617 kb on + strand, within Ga0059261_0040at 36.617 kb on + strand, within Ga0059261_0040at 36.617 kb on + strand, within Ga0059261_0040at 36.617 kb on + strand, within Ga0059261_0040at 36.617 kb on + strand, within Ga0059261_0040at 36.618 kb on - strand, within Ga0059261_0040at 36.618 kb on - strand, within Ga0059261_0040at 36.618 kb on - strand, within Ga0059261_0040at 36.618 kb on - strand, within Ga0059261_0040at 36.618 kb on - strand, within Ga0059261_0040at 36.619 kb on + strand, within Ga0059261_0040at 36.619 kb on + strand, within Ga0059261_0040at 36.619 kb on + strand, within Ga0059261_0040at 36.619 kb on + strand, within Ga0059261_0040at 36.619 kb on + strand, within Ga0059261_0040at 36.619 kb on + strandat 36.619 kb on + strand, within Ga0059261_0040at 36.619 kb on + strand, within Ga0059261_0040at 36.620 kb on - strand, within Ga0059261_0040at 36.620 kb on - strand, within Ga0059261_0040at 36.620 kb on - strand, within Ga0059261_0040at 36.620 kb on - strand, within Ga0059261_0040at 36.778 kb on + strand, within Ga0059261_0040at 36.778 kb on + strandat 36.779 kb on - strand, within Ga0059261_0040at 36.805 kb on + strand, within Ga0059261_0040at 36.806 kb on - strand, within Ga0059261_0040at 36.806 kb on - strand, within Ga0059261_0040at 36.807 kb on + strand, within Ga0059261_0040at 36.807 kb on + strand, within Ga0059261_0040at 36.807 kb on + strand, within Ga0059261_0040at 36.808 kb on - strand, within Ga0059261_0040at 36.808 kb on - strand, within Ga0059261_0040at 36.808 kb on - strand, within Ga0059261_0040at 36.808 kb on - strand, within Ga0059261_0040at 36.808 kb on - strand, within Ga0059261_0040at 36.814 kb on + strand, within Ga0059261_0040at 36.814 kb on + strand, within Ga0059261_0040at 36.814 kb on + strandat 36.814 kb on + strand, within Ga0059261_0040at 36.814 kb on + strand, within Ga0059261_0040at 36.814 kb on + strand, within Ga0059261_0040at 36.814 kb on + strand, within Ga0059261_0040at 36.815 kb on - strand, within Ga0059261_0040at 36.815 kb on - strand, within Ga0059261_0040at 36.815 kb on - strand, within Ga0059261_0040at 36.815 kb on - strand, within Ga0059261_0040at 36.815 kb on - strand, within Ga0059261_0040at 36.815 kb on - strand, within Ga0059261_0040

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.12 mg/ml
remove
33,143 - Ga0059261_0037 0.83 -0.9
33,160 + Ga0059261_0037 0.84 +0.5
33,161 - Ga0059261_0037 0.84 -1.1
33,161 - Ga0059261_0037 0.84 -1.1
33,624 - Ga0059261_0038 0.37 -0.4
33,624 - Ga0059261_0038 0.37 -0.7
33,726 + Ga0059261_0038 0.59 -1.9
33,726 + Ga0059261_0038 0.59 -0.7
33,727 - Ga0059261_0038 0.59 -0.4
33,727 - Ga0059261_0038 0.59 +0.3
33,727 - Ga0059261_0038 0.59 -1.0
33,727 - Ga0059261_0038 0.59 -2.5
33,727 - Ga0059261_0038 0.59 -0.9
33,727 - Ga0059261_0038 0.59 -0.3
33,728 + Ga0059261_0038 0.60 -0.8
33,762 - Ga0059261_0038 0.67 -0.4
33,968 + -0.5
33,969 - +1.0
33,969 - -0.8
34,275 + -0.7
34,414 + Ga0059261_0039 0.18 -1.2
34,414 + Ga0059261_0039 0.18 -0.9
34,414 + Ga0059261_0039 0.18 +0.2
34,414 + +1.3
35,274 + Ga0059261_0039 0.65 -0.8
35,274 + Ga0059261_0039 0.65 -0.0
35,280 + Ga0059261_0039 0.65 -0.2
35,280 + Ga0059261_0039 0.65 -0.9
35,281 - Ga0059261_0039 0.65 -0.4
35,676 + Ga0059261_0039 0.87 -0.5
35,676 + Ga0059261_0039 0.87 -1.2
35,676 + Ga0059261_0039 0.87 -1.3
35,676 + Ga0059261_0039 0.87 -1.1
35,676 + Ga0059261_0039 0.87 -0.2
35,676 + Ga0059261_0039 0.87 -1.0
35,676 + Ga0059261_0039 0.87 -1.5
35,676 + Ga0059261_0039 0.87 -1.0
35,677 - Ga0059261_0039 0.87 -1.0
35,879 + -0.4
35,883 + -0.5
35,883 + -0.3
35,883 + -1.8
35,883 + +0.4
35,883 + +0.0
35,883 + -0.3
35,883 + -0.6
35,884 - -0.0
35,884 - -0.1
35,905 + -0.5
36,018 + +0.3
36,018 + -0.3
36,151 + Ga0059261_0040 0.22 +0.3
36,151 + Ga0059261_0040 0.22 -1.2
36,151 + Ga0059261_0040 0.22 -0.1
36,151 + Ga0059261_0040 0.22 +0.2
36,151 + Ga0059261_0040 0.22 +0.1
36,151 + Ga0059261_0040 0.22 +0.0
36,151 + Ga0059261_0040 0.22 +0.3
36,151 + Ga0059261_0040 0.22 +0.3
36,151 + Ga0059261_0040 0.22 -0.4
36,151 + Ga0059261_0040 0.22 +1.0
36,151 + Ga0059261_0040 0.22 +0.4
36,151 + Ga0059261_0040 0.22 +0.5
36,151 + Ga0059261_0040 0.22 +0.7
36,151 + Ga0059261_0040 0.22 +1.2
36,151 + Ga0059261_0040 0.22 +0.9
36,151 + Ga0059261_0040 0.22 -0.8
36,152 - -0.3
36,152 - Ga0059261_0040 0.22 -0.6
36,152 - Ga0059261_0040 0.22 -0.3
36,152 - Ga0059261_0040 0.22 +0.0
36,152 - Ga0059261_0040 0.22 -0.3
36,152 - Ga0059261_0040 0.22 +0.3
36,152 - Ga0059261_0040 0.22 -0.3
36,152 - Ga0059261_0040 0.22 -0.4
36,152 - Ga0059261_0040 0.22 +1.0
36,152 - Ga0059261_0040 0.22 -0.7
36,152 - Ga0059261_0040 0.22 -0.0
36,152 - Ga0059261_0040 0.22 -0.2
36,152 - Ga0059261_0040 0.22 +0.1
36,152 - Ga0059261_0040 0.22 -0.3
36,152 - Ga0059261_0040 0.22 +0.8
36,152 - Ga0059261_0040 0.22 -0.7
36,152 - Ga0059261_0040 0.22 -0.1
36,153 + Ga0059261_0040 0.22 +0.2
36,153 + Ga0059261_0040 0.22 -0.4
36,153 + Ga0059261_0040 0.22 +0.1
36,153 + Ga0059261_0040 0.22 -0.3
36,153 + Ga0059261_0040 0.22 +0.7
36,153 + Ga0059261_0040 0.22 -1.1
36,154 - Ga0059261_0040 0.23 +0.1
36,168 + Ga0059261_0040 0.24 +0.3
36,168 + Ga0059261_0040 0.24 +0.4
36,451 + Ga0059261_0040 0.51 +0.2
36,452 - Ga0059261_0040 0.51 -1.0
36,452 - Ga0059261_0040 0.51 -0.5
36,463 - Ga0059261_0040 0.52 -0.2
36,482 - Ga0059261_0040 0.54 +1.0
36,482 - Ga0059261_0040 0.54 -0.1
36,482 - Ga0059261_0040 0.54 -0.1
36,482 - Ga0059261_0040 0.54 +1.0
36,487 + Ga0059261_0040 0.54 -0.6
36,488 - Ga0059261_0040 0.54 -0.6
36,583 + Ga0059261_0040 0.63 -0.1
36,583 + Ga0059261_0040 0.63 -0.0
36,617 + Ga0059261_0040 0.66 -0.2
36,617 + Ga0059261_0040 0.66 +1.1
36,617 + Ga0059261_0040 0.66 +0.9
36,617 + Ga0059261_0040 0.66 +0.0
36,617 + Ga0059261_0040 0.66 +0.2
36,617 + Ga0059261_0040 0.66 +0.0
36,617 + Ga0059261_0040 0.66 +1.6
36,617 + Ga0059261_0040 0.66 +0.2
36,617 + Ga0059261_0040 0.66 +0.5
36,618 - Ga0059261_0040 0.67 +0.5
36,618 - Ga0059261_0040 0.67 +1.6
36,618 - Ga0059261_0040 0.67 -0.3
36,618 - Ga0059261_0040 0.67 +0.1
36,618 - Ga0059261_0040 0.67 +0.0
36,619 + Ga0059261_0040 0.67 -0.6
36,619 + Ga0059261_0040 0.67 -0.4
36,619 + Ga0059261_0040 0.67 -0.2
36,619 + Ga0059261_0040 0.67 -0.3
36,619 + Ga0059261_0040 0.67 +0.1
36,619 + +0.3
36,619 + Ga0059261_0040 0.67 +0.1
36,619 + Ga0059261_0040 0.67 -0.1
36,620 - Ga0059261_0040 0.67 -0.8
36,620 - Ga0059261_0040 0.67 +0.5
36,620 - Ga0059261_0040 0.67 -0.2
36,620 - Ga0059261_0040 0.67 -0.7
36,778 + Ga0059261_0040 0.82 -0.0
36,778 + +0.7
36,779 - Ga0059261_0040 0.82 +0.2
36,805 + Ga0059261_0040 0.84 -0.6
36,806 - Ga0059261_0040 0.84 +0.5
36,806 - Ga0059261_0040 0.84 -0.2
36,807 + Ga0059261_0040 0.85 +0.1
36,807 + Ga0059261_0040 0.85 +0.6
36,807 + Ga0059261_0040 0.85 +0.7
36,808 - Ga0059261_0040 0.85 +0.3
36,808 - Ga0059261_0040 0.85 +0.9
36,808 - Ga0059261_0040 0.85 +0.3
36,808 - Ga0059261_0040 0.85 +0.2
36,808 - Ga0059261_0040 0.85 +0.3
36,814 + Ga0059261_0040 0.85 -0.0
36,814 + Ga0059261_0040 0.85 +0.6
36,814 + -0.7
36,814 + Ga0059261_0040 0.85 -1.3
36,814 + Ga0059261_0040 0.85 -1.1
36,814 + Ga0059261_0040 0.85 -0.2
36,814 + Ga0059261_0040 0.85 +0.2
36,815 - Ga0059261_0040 0.85 -0.1
36,815 - Ga0059261_0040 0.85 -0.4
36,815 - Ga0059261_0040 0.85 +0.0
36,815 - Ga0059261_0040 0.85 +0.3
36,815 - Ga0059261_0040 0.85 +0.3
36,815 - Ga0059261_0040 0.85 +0.3

Or see this region's nucleotide sequence