Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0012

Experiment: Bacitracin 0.12 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0009 and Ga0059261_0010 are separated by 80 nucleotidesGa0059261_0010 and Ga0059261_0011 overlap by 4 nucleotidesGa0059261_0011 and Ga0059261_0012 overlap by 4 nucleotidesGa0059261_0012 and Ga0059261_0013 are separated by 21 nucleotidesGa0059261_0013 and Ga0059261_0014 are separated by 144 nucleotides Ga0059261_0009: Ga0059261_0009 - Domain of unknown function (DUF4170), at 9,394 to 9,612 _0009 Ga0059261_0010: Ga0059261_0010 - hypothetical protein, at 9,693 to 10,028 _0010 Ga0059261_0011: Ga0059261_0011 - Protein of unknown function (DUF3618), at 10,025 to 10,360 _0011 Ga0059261_0012: Ga0059261_0012 - Protein of unknown function (DUF1469), at 10,357 to 10,710 _0012 Ga0059261_0013: Ga0059261_0013 - hypothetical protein, at 10,732 to 11,217 _0013 Ga0059261_0014: Ga0059261_0014 - phosphopyruvate hydratase, at 11,362 to 12,639 _0014 Position (kb) 10 11Strain fitness (log2 ratio) -2 -1 0 1 2at 9.387 kb on + strandat 9.388 kb on - strandat 9.388 kb on - strandat 9.388 kb on - strandat 9.443 kb on + strand, within Ga0059261_0009at 9.443 kb on + strand, within Ga0059261_0009at 9.510 kb on - strandat 9.634 kb on - strandat 9.634 kb on - strandat 9.648 kb on - strandat 10.478 kb on + strand, within Ga0059261_0012at 10.478 kb on + strand, within Ga0059261_0012at 10.478 kb on + strand, within Ga0059261_0012at 10.478 kb on + strand, within Ga0059261_0012at 10.478 kb on + strand, within Ga0059261_0012at 10.479 kb on - strand, within Ga0059261_0012at 10.479 kb on - strand, within Ga0059261_0012at 10.479 kb on - strand, within Ga0059261_0012at 10.479 kb on - strand, within Ga0059261_0012at 10.610 kb on + strand, within Ga0059261_0012at 10.610 kb on + strand, within Ga0059261_0012at 10.610 kb on + strand, within Ga0059261_0012at 10.611 kb on - strand, within Ga0059261_0012at 10.631 kb on + strand, within Ga0059261_0012at 10.631 kb on + strand, within Ga0059261_0012at 10.632 kb on - strand, within Ga0059261_0012at 10.632 kb on - strand, within Ga0059261_0012at 10.632 kb on - strand, within Ga0059261_0012at 10.632 kb on - strandat 10.632 kb on - strand, within Ga0059261_0012at 10.632 kb on - strand, within Ga0059261_0012at 10.982 kb on + strand, within Ga0059261_0013at 10.982 kb on + strand, within Ga0059261_0013at 10.982 kb on + strand, within Ga0059261_0013at 10.983 kb on - strand, within Ga0059261_0013at 11.076 kb on + strand, within Ga0059261_0013at 11.237 kb on + strandat 11.237 kb on + strandat 11.238 kb on - strandat 11.283 kb on + strandat 11.283 kb on + strandat 11.283 kb on + strandat 11.284 kb on - strandat 11.284 kb on - strandat 11.284 kb on - strandat 11.314 kb on + strandat 11.314 kb on + strandat 11.314 kb on + strandat 11.347 kb on + strandat 11.347 kb on + strandat 11.536 kb on + strand, within Ga0059261_0014at 11.537 kb on - strand, within Ga0059261_0014at 11.537 kb on - strand, within Ga0059261_0014at 11.537 kb on - strand, within Ga0059261_0014

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.12 mg/ml
remove
9,387 + -2.4
9,388 - -0.0
9,388 - -0.1
9,388 - -0.3
9,443 + Ga0059261_0009 0.22 -1.3
9,443 + Ga0059261_0009 0.22 +1.3
9,510 - +1.6
9,634 - -0.3
9,634 - -0.1
9,648 - +0.3
10,478 + Ga0059261_0012 0.34 -0.8
10,478 + Ga0059261_0012 0.34 +0.2
10,478 + Ga0059261_0012 0.34 -0.3
10,478 + Ga0059261_0012 0.34 -0.4
10,478 + Ga0059261_0012 0.34 -0.0
10,479 - Ga0059261_0012 0.34 -2.0
10,479 - Ga0059261_0012 0.34 -0.2
10,479 - Ga0059261_0012 0.34 +0.6
10,479 - Ga0059261_0012 0.34 +0.1
10,610 + Ga0059261_0012 0.71 +0.2
10,610 + Ga0059261_0012 0.71 +0.2
10,610 + Ga0059261_0012 0.71 -0.2
10,611 - Ga0059261_0012 0.72 -0.4
10,631 + Ga0059261_0012 0.77 -0.2
10,631 + Ga0059261_0012 0.77 -0.4
10,632 - Ga0059261_0012 0.78 -0.9
10,632 - Ga0059261_0012 0.78 -0.9
10,632 - Ga0059261_0012 0.78 -0.6
10,632 - -0.3
10,632 - Ga0059261_0012 0.78 -0.6
10,632 - Ga0059261_0012 0.78 -0.9
10,982 + Ga0059261_0013 0.51 -0.5
10,982 + Ga0059261_0013 0.51 +0.2
10,982 + Ga0059261_0013 0.51 -0.4
10,983 - Ga0059261_0013 0.52 -0.6
11,076 + Ga0059261_0013 0.71 +1.0
11,237 + -0.3
11,237 + +2.0
11,238 - -0.3
11,283 + -0.3
11,283 + -0.3
11,283 + -1.9
11,284 - -0.7
11,284 - +0.6
11,284 - -0.3
11,314 + -0.6
11,314 + -0.1
11,314 + -0.6
11,347 + +0.0
11,347 + -0.1
11,536 + Ga0059261_0014 0.14 -1.6
11,537 - Ga0059261_0014 0.14 +0.5
11,537 - Ga0059261_0014 0.14 +0.3
11,537 - Ga0059261_0014 0.14 -0.6

Or see this region's nucleotide sequence