Experiment: Bacitracin 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0009 and Ga0059261_0010 are separated by 80 nucleotides Ga0059261_0010 and Ga0059261_0011 overlap by 4 nucleotides Ga0059261_0011 and Ga0059261_0012 overlap by 4 nucleotides Ga0059261_0012 and Ga0059261_0013 are separated by 21 nucleotides Ga0059261_0013 and Ga0059261_0014 are separated by 144 nucleotides
Ga0059261_0009: Ga0059261_0009 - Domain of unknown function (DUF4170), at 9,394 to 9,612
_0009
Ga0059261_0010: Ga0059261_0010 - hypothetical protein, at 9,693 to 10,028
_0010
Ga0059261_0011: Ga0059261_0011 - Protein of unknown function (DUF3618), at 10,025 to 10,360
_0011
Ga0059261_0012: Ga0059261_0012 - Protein of unknown function (DUF1469), at 10,357 to 10,710
_0012
Ga0059261_0013: Ga0059261_0013 - hypothetical protein, at 10,732 to 11,217
_0013
Ga0059261_0014: Ga0059261_0014 - phosphopyruvate hydratase, at 11,362 to 12,639
_0014
Position (kb)
10
11 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 9.387 kb on + strand at 9.388 kb on - strand at 9.388 kb on - strand at 9.388 kb on - strand at 9.443 kb on + strand, within Ga0059261_0009 at 9.443 kb on + strand, within Ga0059261_0009 at 9.510 kb on - strand at 9.634 kb on - strand at 9.634 kb on - strand at 9.648 kb on - strand at 10.478 kb on + strand, within Ga0059261_0012 at 10.478 kb on + strand, within Ga0059261_0012 at 10.478 kb on + strand, within Ga0059261_0012 at 10.478 kb on + strand, within Ga0059261_0012 at 10.478 kb on + strand, within Ga0059261_0012 at 10.479 kb on - strand, within Ga0059261_0012 at 10.479 kb on - strand, within Ga0059261_0012 at 10.479 kb on - strand, within Ga0059261_0012 at 10.479 kb on - strand, within Ga0059261_0012 at 10.610 kb on + strand, within Ga0059261_0012 at 10.610 kb on + strand, within Ga0059261_0012 at 10.610 kb on + strand, within Ga0059261_0012 at 10.611 kb on - strand, within Ga0059261_0012 at 10.631 kb on + strand, within Ga0059261_0012 at 10.631 kb on + strand, within Ga0059261_0012 at 10.632 kb on - strand, within Ga0059261_0012 at 10.632 kb on - strand, within Ga0059261_0012 at 10.632 kb on - strand, within Ga0059261_0012 at 10.632 kb on - strand at 10.632 kb on - strand, within Ga0059261_0012 at 10.632 kb on - strand, within Ga0059261_0012 at 10.982 kb on + strand, within Ga0059261_0013 at 10.982 kb on + strand, within Ga0059261_0013 at 10.982 kb on + strand, within Ga0059261_0013 at 10.983 kb on - strand, within Ga0059261_0013 at 11.076 kb on + strand, within Ga0059261_0013 at 11.237 kb on + strand at 11.237 kb on + strand at 11.238 kb on - strand at 11.283 kb on + strand at 11.283 kb on + strand at 11.283 kb on + strand at 11.284 kb on - strand at 11.284 kb on - strand at 11.284 kb on - strand at 11.314 kb on + strand at 11.314 kb on + strand at 11.314 kb on + strand at 11.347 kb on + strand at 11.347 kb on + strand at 11.536 kb on + strand, within Ga0059261_0014 at 11.537 kb on - strand, within Ga0059261_0014 at 11.537 kb on - strand, within Ga0059261_0014 at 11.537 kb on - strand, within Ga0059261_0014
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.12 mg/ml remove 9,387 + -2.4 9,388 - -0.0 9,388 - -0.1 9,388 - -0.3 9,443 + Ga0059261_0009 0.22 -1.3 9,443 + Ga0059261_0009 0.22 +1.3 9,510 - +1.6 9,634 - -0.3 9,634 - -0.1 9,648 - +0.3 10,478 + Ga0059261_0012 0.34 -0.8 10,478 + Ga0059261_0012 0.34 +0.2 10,478 + Ga0059261_0012 0.34 -0.3 10,478 + Ga0059261_0012 0.34 -0.4 10,478 + Ga0059261_0012 0.34 -0.0 10,479 - Ga0059261_0012 0.34 -2.0 10,479 - Ga0059261_0012 0.34 -0.2 10,479 - Ga0059261_0012 0.34 +0.6 10,479 - Ga0059261_0012 0.34 +0.1 10,610 + Ga0059261_0012 0.71 +0.2 10,610 + Ga0059261_0012 0.71 +0.2 10,610 + Ga0059261_0012 0.71 -0.2 10,611 - Ga0059261_0012 0.72 -0.4 10,631 + Ga0059261_0012 0.77 -0.2 10,631 + Ga0059261_0012 0.77 -0.4 10,632 - Ga0059261_0012 0.78 -0.9 10,632 - Ga0059261_0012 0.78 -0.9 10,632 - Ga0059261_0012 0.78 -0.6 10,632 - -0.3 10,632 - Ga0059261_0012 0.78 -0.6 10,632 - Ga0059261_0012 0.78 -0.9 10,982 + Ga0059261_0013 0.51 -0.5 10,982 + Ga0059261_0013 0.51 +0.2 10,982 + Ga0059261_0013 0.51 -0.4 10,983 - Ga0059261_0013 0.52 -0.6 11,076 + Ga0059261_0013 0.71 +1.0 11,237 + -0.3 11,237 + +2.0 11,238 - -0.3 11,283 + -0.3 11,283 + -0.3 11,283 + -1.9 11,284 - -0.7 11,284 - +0.6 11,284 - -0.3 11,314 + -0.6 11,314 + -0.1 11,314 + -0.6 11,347 + +0.0 11,347 + -0.1 11,536 + Ga0059261_0014 0.14 -1.6 11,537 - Ga0059261_0014 0.14 +0.5 11,537 - Ga0059261_0014 0.14 +0.3 11,537 - Ga0059261_0014 0.14 -0.6
Or see this region's nucleotide sequence