Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2580

Experiment: MoYLS4 with 5-Hydroxymethylfurfural 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2579 and DvMF_2580 are separated by 397 nucleotidesDvMF_2580 and DvMF_2581 are separated by 86 nucleotides DvMF_2579: DvMF_2579 - transcriptional regulator, ArsR family (RefSeq), at 3,261,685 to 3,262,623 _2579 DvMF_2580: DvMF_2580 - S-adenosyl-L-homocysteine hydrolase (RefSeq), at 3,263,021 to 3,264,460 _2580 DvMF_2581: DvMF_2581 - cation diffusion facilitator family transporter (RefSeq), at 3,264,547 to 3,265,524 _2581 Position (kb) 3263 3264 3265Strain fitness (log2 ratio) -1 0 1at 3262.617 kb on - strandat 3264.960 kb on - strand, within DvMF_2581at 3264.970 kb on + strand, within DvMF_2581at 3265.042 kb on + strand, within DvMF_2581at 3265.093 kb on - strand, within DvMF_2581at 3265.168 kb on - strand, within DvMF_2581at 3265.170 kb on + strand, within DvMF_2581at 3265.173 kb on - strand, within DvMF_2581at 3265.434 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 5-Hydroxymethylfurfural 2.5 mM
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3,262,617 - -0.7
3,264,960 - DvMF_2581 0.42 -0.4
3,264,970 + DvMF_2581 0.43 -0.5
3,265,042 + DvMF_2581 0.51 -0.6
3,265,093 - DvMF_2581 0.56 -0.4
3,265,168 - DvMF_2581 0.63 -0.6
3,265,170 + DvMF_2581 0.64 -1.3
3,265,173 - DvMF_2581 0.64 -0.6
3,265,434 + -1.1

Or see this region's nucleotide sequence