Experiment: MoYLS4 with 5-Hydroxymethylfurfural 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0843 and DvMF_0844 are separated by 424 nucleotides DvMF_0844 and DvMF_0845 are separated by 111 nucleotides DvMF_0845 and DvMF_0846 are separated by 13 nucleotides
DvMF_0843: DvMF_0843 - glycosyl transferase family 9 (RefSeq), at 1,018,796 to 1,020,058
_0843
DvMF_0844: DvMF_0844 - Sua5/YciO/YrdC/YwlC family protein (RefSeq), at 1,020,483 to 1,021,139
_0844
DvMF_0845: DvMF_0845 - protein of unknown function DUF163 (RefSeq), at 1,021,251 to 1,021,718
_0845
DvMF_0846: DvMF_0846 - hypothetical protein (RefSeq), at 1,021,732 to 1,024,080
_0846
Position (kb)
1020
1021
1022 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1019.646 kb on + strand, within DvMF_0843 at 1019.654 kb on - strand, within DvMF_0843 at 1019.669 kb on - strand, within DvMF_0843 at 1019.678 kb on - strand, within DvMF_0843 at 1019.790 kb on - strand, within DvMF_0843 at 1019.800 kb on - strand, within DvMF_0843 at 1019.836 kb on - strand, within DvMF_0843 at 1019.889 kb on + strand, within DvMF_0843 at 1019.892 kb on - strand, within DvMF_0843 at 1020.256 kb on - strand at 1021.210 kb on + strand at 1021.481 kb on + strand, within DvMF_0845 at 1021.489 kb on - strand, within DvMF_0845 at 1021.676 kb on - strand at 1022.071 kb on - strand, within DvMF_0846
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with 5-Hydroxymethylfurfural 2.5 mM remove 1,019,646 + DvMF_0843 0.67 -1.3 1,019,654 - DvMF_0843 0.68 -0.2 1,019,669 - DvMF_0843 0.69 -0.3 1,019,678 - DvMF_0843 0.70 +0.0 1,019,790 - DvMF_0843 0.79 +0.8 1,019,800 - DvMF_0843 0.79 +0.1 1,019,836 - DvMF_0843 0.82 -0.4 1,019,889 + DvMF_0843 0.87 -0.7 1,019,892 - DvMF_0843 0.87 -0.5 1,020,256 - -0.2 1,021,210 + -0.5 1,021,481 + DvMF_0845 0.49 -0.0 1,021,489 - DvMF_0845 0.51 -0.1 1,021,676 - -0.5 1,022,071 - DvMF_0846 0.14 -3.2
Or see this region's nucleotide sequence