Experiment: MoYLS4 with 5-Hydroxymethylfurfural 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0320 and DvMF_0321 are separated by 525 nucleotides DvMF_0321 and DvMF_0322 are separated by 279 nucleotides DvMF_0322 and DvMF_0323 overlap by 4 nucleotides
DvMF_0320: DvMF_0320 - Formate dehydrogenase (RefSeq), at 371,427 to 373,529
_0320
DvMF_0321: DvMF_0321 - iron-containing alcohol dehydrogenase (RefSeq), at 374,055 to 375,236
_0321
DvMF_0322: DvMF_0322 - heterodisulfide reductase, C subunit (RefSeq), at 375,516 to 376,076
_0322
DvMF_0323: DvMF_0323 - CoB--CoM heterodisulfide reductase (RefSeq), at 376,073 to 377,053
_0323
Position (kb) 374
375
376 Strain fitness (log2 ratio) -2
-1
0
1 at 373.154 kb on + strand, within DvMF_0320 at 373.162 kb on - strand, within DvMF_0320 at 373.184 kb on + strand, within DvMF_0320 at 373.187 kb on - strand, within DvMF_0320 at 373.238 kb on - strand, within DvMF_0320 at 373.398 kb on + strand at 373.413 kb on - strand at 373.413 kb on - strand at 373.444 kb on + strand at 373.477 kb on - strand at 373.519 kb on - strand at 373.519 kb on - strand at 373.535 kb on + strand at 373.666 kb on - strand at 373.781 kb on - strand at 373.852 kb on - strand at 373.930 kb on + strand at 373.990 kb on - strand at 373.990 kb on - strand at 373.990 kb on - strand at 374.038 kb on - strand at 374.072 kb on + strand at 374.072 kb on + strand at 374.072 kb on + strand at 374.095 kb on + strand at 374.103 kb on - strand at 374.158 kb on + strand at 374.158 kb on + strand at 374.158 kb on + strand at 374.270 kb on - strand, within DvMF_0321 at 374.341 kb on + strand, within DvMF_0321 at 374.657 kb on - strand, within DvMF_0321 at 374.657 kb on - strand, within DvMF_0321 at 374.708 kb on - strand, within DvMF_0321 at 374.720 kb on + strand, within DvMF_0321 at 374.810 kb on + strand, within DvMF_0321 at 374.855 kb on + strand, within DvMF_0321 at 375.058 kb on + strand, within DvMF_0321 at 375.580 kb on + strand, within DvMF_0322 at 375.713 kb on - strand, within DvMF_0322
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with 5-Hydroxymethylfurfural 2.5 mM remove 373,154 + DvMF_0320 0.82 +0.6 373,162 - DvMF_0320 0.83 +0.0 373,184 + DvMF_0320 0.84 -1.0 373,187 - DvMF_0320 0.84 +0.2 373,238 - DvMF_0320 0.86 +0.2 373,398 + -0.4 373,413 - -0.5 373,413 - -0.6 373,444 + -0.3 373,477 - -2.6 373,519 - -0.4 373,519 - -0.4 373,535 + -0.5 373,666 - -1.0 373,781 - -0.9 373,852 - -2.4 373,930 + -0.7 373,990 - -0.9 373,990 - -0.4 373,990 - -0.7 374,038 - -1.0 374,072 + -0.9 374,072 + -0.9 374,072 + -0.5 374,095 + -2.1 374,103 - -1.3 374,158 + -0.8 374,158 + -0.8 374,158 + -0.7 374,270 - DvMF_0321 0.18 -0.9 374,341 + DvMF_0321 0.24 -0.9 374,657 - DvMF_0321 0.51 -0.6 374,657 - DvMF_0321 0.51 -1.3 374,708 - DvMF_0321 0.55 -0.9 374,720 + DvMF_0321 0.56 -0.8 374,810 + DvMF_0321 0.64 -0.9 374,855 + DvMF_0321 0.68 -1.1 375,058 + DvMF_0321 0.85 -1.0 375,580 + DvMF_0322 0.11 -0.1 375,713 - DvMF_0322 0.35 +0.5
Or see this region's nucleotide sequence