Experiment: MoYLS4 with 5-Hydroxymethylfurfural 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0225 and DvMF_0226 are separated by 315 nucleotides DvMF_0226 and DvMF_0227 are separated by 242 nucleotides DvMF_0227 and DvMF_0228 are separated by 215 nucleotides DvMF_0228 and DvMF_0229 are separated by 45 nucleotides
DvMF_0225: DvMF_0225 - glycine cleavage system protein H (RefSeq), at 252,596 to 252,979
_0225
DvMF_0226: DvMF_0226 - response regulator receiver protein (RefSeq), at 253,295 to 253,708
_0226
DvMF_0227: DvMF_0227 - phosphoglucomutase (RefSeq), at 253,951 to 255,600
_0227
DvMF_0228: DvMF_0228 - hypothetical protein (RefSeq), at 255,816 to 256,010
_0228
DvMF_0229: DvMF_0229 - DNA methylase N-4/N-6 domain protein (RefSeq), at 256,056 to 257,255
_0229
Position (kb) 253
254
255
256 Strain fitness (log2 ratio) -1
0
1 at 252.995 kb on + strand at 253.061 kb on + strand at 253.082 kb on - strand at 253.112 kb on - strand at 253.152 kb on - strand at 253.252 kb on + strand at 253.666 kb on + strand, within DvMF_0226 at 253.833 kb on + strand at 253.908 kb on + strand at 253.995 kb on - strand at 254.152 kb on - strand, within DvMF_0227 at 254.268 kb on - strand, within DvMF_0227 at 254.305 kb on - strand, within DvMF_0227 at 254.388 kb on - strand, within DvMF_0227 at 254.476 kb on + strand, within DvMF_0227 at 254.484 kb on - strand, within DvMF_0227 at 255.144 kb on + strand, within DvMF_0227 at 255.157 kb on + strand, within DvMF_0227 at 255.262 kb on - strand, within DvMF_0227 at 255.272 kb on + strand, within DvMF_0227 at 255.518 kb on + strand at 255.609 kb on - strand at 255.620 kb on - strand at 255.723 kb on - strand at 255.880 kb on - strand, within DvMF_0228
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with 5-Hydroxymethylfurfural 2.5 mM remove 252,995 + +0.0 253,061 + -0.9 253,082 - -0.8 253,112 - +0.3 253,152 - -0.4 253,252 + -0.5 253,666 + DvMF_0226 0.90 +0.8 253,833 + -0.2 253,908 + -0.4 253,995 - -0.4 254,152 - DvMF_0227 0.12 +0.2 254,268 - DvMF_0227 0.19 -0.3 254,305 - DvMF_0227 0.21 -0.3 254,388 - DvMF_0227 0.26 +0.4 254,476 + DvMF_0227 0.32 +0.6 254,484 - DvMF_0227 0.32 -0.1 255,144 + DvMF_0227 0.72 -0.4 255,157 + DvMF_0227 0.73 -0.5 255,262 - DvMF_0227 0.79 -0.3 255,272 + DvMF_0227 0.80 +0.6 255,518 + +0.1 255,609 - -0.4 255,620 - -0.2 255,723 - -1.2 255,880 - DvMF_0228 0.33 +0.4
Or see this region's nucleotide sequence