Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0060

Experiment: MoYLS4 with 5-Hydroxymethylfurfural 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0059 and DvMF_0060 are separated by 128 nucleotidesDvMF_0060 and DvMF_0061 are separated by 102 nucleotides DvMF_0059: DvMF_0059 - phosphoglucosamine mutase (RefSeq), at 76,660 to 78,012 _0059 DvMF_0060: DvMF_0060 - UTP-glucose-1-phosphate uridylyltransferase (RefSeq), at 78,141 to 79,016 _0060 DvMF_0061: DvMF_0061 - primosomal protein N' (RefSeq), at 79,119 to 81,539 _0061 Position (kb) 78 79 80Strain fitness (log2 ratio) -1 0 1at 78.001 kb on + strandat 78.364 kb on - strand, within DvMF_0060at 78.802 kb on - strand, within DvMF_0060at 78.918 kb on - strand, within DvMF_0060at 78.952 kb on + strandat 79.024 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 5-Hydroxymethylfurfural 2.5 mM
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78,001 + -1.5
78,364 - DvMF_0060 0.25 -1.0
78,802 - DvMF_0060 0.75 -0.6
78,918 - DvMF_0060 0.89 -0.6
78,952 + -0.2
79,024 - -0.9

Or see this region's nucleotide sequence