Experiment: Adenosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3290 and Dshi_3291 are separated by 38 nucleotides Dshi_3291 and Dshi_3292 are separated by 29 nucleotides Dshi_3292 and Dshi_3293 are separated by 5 nucleotides Dshi_3293 and Dshi_3294 are separated by 12 nucleotides
Dshi_3290: Dshi_3290 - Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 3,456,894 to 3,457,313
_3290
Dshi_3291: Dshi_3291 - NAD-dependent epimerase/dehydratase (RefSeq), at 3,457,352 to 3,458,224
_3291
Dshi_3292: Dshi_3292 - hypothetical protein (RefSeq), at 3,458,254 to 3,459,135
_3292
Dshi_3293: Dshi_3293 - hypothetical protein (RefSeq), at 3,459,141 to 3,459,959
_3293
Dshi_3294: Dshi_3294 - deoxyxylulose-5-phosphate synthase (RefSeq), at 3,459,972 to 3,461,903
_3294
Position (kb)
3458
3459
3460 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3457.425 kb on - strand at 3457.517 kb on - strand, within Dshi_3291 at 3457.547 kb on + strand, within Dshi_3291 at 3457.600 kb on + strand, within Dshi_3291 at 3457.718 kb on - strand, within Dshi_3291 at 3457.878 kb on + strand, within Dshi_3291 at 3457.881 kb on + strand, within Dshi_3291 at 3457.953 kb on - strand, within Dshi_3291 at 3458.043 kb on - strand, within Dshi_3291 at 3458.079 kb on - strand, within Dshi_3291 at 3458.158 kb on - strand at 3458.168 kb on - strand at 3458.234 kb on - strand at 3458.252 kb on + strand at 3458.260 kb on - strand at 3458.330 kb on + strand at 3458.338 kb on - strand at 3458.471 kb on + strand, within Dshi_3292 at 3458.471 kb on + strand, within Dshi_3292 at 3458.540 kb on + strand, within Dshi_3292 at 3458.540 kb on + strand, within Dshi_3292 at 3458.548 kb on - strand, within Dshi_3292 at 3458.610 kb on + strand, within Dshi_3292 at 3458.646 kb on + strand, within Dshi_3292 at 3458.709 kb on + strand, within Dshi_3292 at 3458.888 kb on + strand, within Dshi_3292 at 3458.925 kb on + strand, within Dshi_3292 at 3458.961 kb on - strand, within Dshi_3292 at 3459.029 kb on - strand, within Dshi_3292 at 3459.112 kb on - strand at 3459.147 kb on - strand at 3459.170 kb on + strand at 3459.227 kb on + strand, within Dshi_3293 at 3459.321 kb on + strand, within Dshi_3293 at 3459.414 kb on + strand, within Dshi_3293 at 3459.523 kb on - strand, within Dshi_3293 at 3459.555 kb on - strand, within Dshi_3293 at 3459.693 kb on - strand, within Dshi_3293 at 3459.712 kb on + strand, within Dshi_3293 at 3459.755 kb on + strand, within Dshi_3293 at 3459.853 kb on + strand, within Dshi_3293 at 3459.893 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (N) remove 3,457,425 - -1.7 3,457,517 - Dshi_3291 0.19 -1.9 3,457,547 + Dshi_3291 0.22 -0.5 3,457,600 + Dshi_3291 0.28 -2.3 3,457,718 - Dshi_3291 0.42 -3.2 3,457,878 + Dshi_3291 0.60 -1.4 3,457,881 + Dshi_3291 0.61 -0.5 3,457,953 - Dshi_3291 0.69 -1.1 3,458,043 - Dshi_3291 0.79 -2.4 3,458,079 - Dshi_3291 0.83 -2.4 3,458,158 - -2.1 3,458,168 - -0.8 3,458,234 - +0.0 3,458,252 + +0.0 3,458,260 - -0.0 3,458,330 + +1.4 3,458,338 - -0.3 3,458,471 + Dshi_3292 0.25 -0.3 3,458,471 + Dshi_3292 0.25 -0.4 3,458,540 + Dshi_3292 0.32 +0.4 3,458,540 + Dshi_3292 0.32 -1.0 3,458,548 - Dshi_3292 0.33 -0.6 3,458,610 + Dshi_3292 0.40 +0.1 3,458,646 + Dshi_3292 0.44 -0.0 3,458,709 + Dshi_3292 0.52 -0.6 3,458,888 + Dshi_3292 0.72 +0.3 3,458,925 + Dshi_3292 0.76 -0.2 3,458,961 - Dshi_3292 0.80 +1.2 3,459,029 - Dshi_3292 0.88 -0.1 3,459,112 - -0.3 3,459,147 - -1.0 3,459,170 + -0.0 3,459,227 + Dshi_3293 0.11 +1.3 3,459,321 + Dshi_3293 0.22 -0.1 3,459,414 + Dshi_3293 0.33 +0.5 3,459,523 - Dshi_3293 0.47 +0.5 3,459,555 - Dshi_3293 0.51 -0.2 3,459,693 - Dshi_3293 0.67 +1.0 3,459,712 + Dshi_3293 0.70 -1.2 3,459,755 + Dshi_3293 0.75 +0.2 3,459,853 + Dshi_3293 0.87 -0.1 3,459,893 + -0.1
Or see this region's nucleotide sequence