Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0023

Experiment: MoYLS4 no iron

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0021 and DVUA0022 are separated by 8 nucleotidesDVUA0022 and DVUA0023 are separated by 98 nucleotidesDVUA0023 and atoC are separated by 71 nucleotides DVUA0021: DVUA0021 - conserved hypothetical protein (TIGR), at 26,632 to 27,693 DVUA0021 DVUA0022: DVUA0022 - ABC transporter, ATP-binding protein (TIGR), at 27,702 to 28,388 DVUA0022 DVUA0023: DVUA0023 - ABC transporter, permease protein, putative (TIGR), at 28,487 to 29,617 DVUA0023 DVUA0024: atoC - sigma-54 interaction domain protein (TIGR), at 29,689 to 30,828 atoC Position (kb) 28 29 30Strain fitness (log2 ratio) -2 -1 0 1at 27.565 kb on + strand, within DVUA0021at 27.700 kb on + strandat 27.703 kb on - strandat 27.756 kb on + strandat 27.938 kb on + strand, within DVUA0022at 28.046 kb on + strand, within DVUA0022at 28.046 kb on + strand, within DVUA0022at 28.046 kb on + strand, within DVUA0022at 28.046 kb on + strand, within DVUA0022at 28.046 kb on + strand, within DVUA0022at 28.054 kb on - strand, within DVUA0022at 28.054 kb on - strand, within DVUA0022at 28.054 kb on - strand, within DVUA0022at 28.058 kb on + strand, within DVUA0022at 28.066 kb on - strand, within DVUA0022at 28.066 kb on - strand, within DVUA0022at 28.066 kb on - strand, within DVUA0022at 28.066 kb on - strand, within DVUA0022at 28.067 kb on + strand, within DVUA0022at 28.072 kb on + strand, within DVUA0022at 28.080 kb on - strand, within DVUA0022at 28.094 kb on + strand, within DVUA0022at 28.173 kb on - strand, within DVUA0022at 28.199 kb on + strand, within DVUA0022at 28.259 kb on - strand, within DVUA0022at 28.259 kb on - strand, within DVUA0022at 28.277 kb on - strand, within DVUA0022at 28.277 kb on - strand, within DVUA0022at 28.322 kb on - strandat 28.364 kb on + strandat 28.372 kb on - strandat 28.416 kb on + strandat 28.492 kb on - strandat 28.495 kb on - strandat 28.502 kb on - strandat 28.520 kb on + strandat 28.576 kb on + strandat 28.675 kb on - strand, within DVUA0023at 28.679 kb on + strand, within DVUA0023at 28.726 kb on - strand, within DVUA0023at 28.757 kb on - strand, within DVUA0023at 28.830 kb on + strand, within DVUA0023at 28.880 kb on - strand, within DVUA0023at 29.000 kb on - strand, within DVUA0023at 29.002 kb on + strand, within DVUA0023at 29.136 kb on + strand, within DVUA0023at 29.164 kb on + strand, within DVUA0023at 29.425 kb on - strand, within DVUA0023at 29.465 kb on + strand, within DVUA0023at 29.465 kb on - strand, within DVUA0023at 29.473 kb on - strand, within DVUA0023at 29.543 kb on + strandat 29.543 kb on - strandat 29.629 kb on + strandat 29.735 kb on - strandat 29.783 kb on + strandat 29.783 kb on + strandat 29.811 kb on - strand, within atoCat 29.876 kb on + strand, within atoCat 29.876 kb on + strand, within atoCat 29.884 kb on - strand, within atoCat 29.886 kb on - strand, within atoCat 29.968 kb on + strand, within atoCat 30.080 kb on + strand, within atoCat 30.080 kb on + strand, within atoCat 30.131 kb on + strand, within atoCat 30.167 kb on - strand, within atoCat 30.172 kb on + strand, within atoCat 30.218 kb on + strand, within atoCat 30.246 kb on + strand, within atoCat 30.367 kb on - strand, within atoCat 30.441 kb on + strand, within atoCat 30.488 kb on + strand, within atoCat 30.501 kb on - strand, within atoCat 30.587 kb on + strand, within atoC

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 no iron
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27,565 + DVUA0021 0.88 +0.7
27,700 + +0.3
27,703 - +1.1
27,756 + -1.1
27,938 + DVUA0022 0.34 +0.0
28,046 + DVUA0022 0.50 -1.2
28,046 + DVUA0022 0.50 -0.3
28,046 + DVUA0022 0.50 -0.5
28,046 + DVUA0022 0.50 -0.3
28,046 + DVUA0022 0.50 -0.1
28,054 - DVUA0022 0.51 -0.2
28,054 - DVUA0022 0.51 -0.1
28,054 - DVUA0022 0.51 +0.6
28,058 + DVUA0022 0.52 -0.0
28,066 - DVUA0022 0.53 -0.0
28,066 - DVUA0022 0.53 -0.3
28,066 - DVUA0022 0.53 +0.5
28,066 - DVUA0022 0.53 -0.6
28,067 + DVUA0022 0.53 -0.1
28,072 + DVUA0022 0.54 +1.2
28,080 - DVUA0022 0.55 -0.1
28,094 + DVUA0022 0.57 +1.1
28,173 - DVUA0022 0.69 -0.4
28,199 + DVUA0022 0.72 -0.3
28,259 - DVUA0022 0.81 -0.1
28,259 - DVUA0022 0.81 -0.2
28,277 - DVUA0022 0.84 -0.5
28,277 - DVUA0022 0.84 +0.9
28,322 - +0.2
28,364 + -1.9
28,372 - -1.7
28,416 + +0.2
28,492 - +0.6
28,495 - +0.0
28,502 - -0.7
28,520 + -0.0
28,576 + -0.4
28,675 - DVUA0023 0.17 +0.3
28,679 + DVUA0023 0.17 -0.9
28,726 - DVUA0023 0.21 +0.2
28,757 - DVUA0023 0.24 -0.2
28,830 + DVUA0023 0.30 -0.8
28,880 - DVUA0023 0.35 -0.0
29,000 - DVUA0023 0.45 -0.9
29,002 + DVUA0023 0.46 -1.8
29,136 + DVUA0023 0.57 -0.3
29,164 + DVUA0023 0.60 -0.5
29,425 - DVUA0023 0.83 -0.1
29,465 + DVUA0023 0.86 -0.7
29,465 - DVUA0023 0.86 -0.4
29,473 - DVUA0023 0.87 -0.4
29,543 + -0.7
29,543 - +0.7
29,629 + -0.7
29,735 - -0.0
29,783 + -0.2
29,783 + +0.4
29,811 - atoC DVUA0024 0.11 -0.1
29,876 + atoC DVUA0024 0.16 -1.1
29,876 + atoC DVUA0024 0.16 +0.0
29,884 - atoC DVUA0024 0.17 -0.4
29,886 - atoC DVUA0024 0.17 -0.7
29,968 + atoC DVUA0024 0.24 -0.7
30,080 + atoC DVUA0024 0.34 +0.5
30,080 + atoC DVUA0024 0.34 -1.0
30,131 + atoC DVUA0024 0.39 +0.4
30,167 - atoC DVUA0024 0.42 +0.0
30,172 + atoC DVUA0024 0.42 -1.8
30,218 + atoC DVUA0024 0.46 +0.2
30,246 + atoC DVUA0024 0.49 +0.2
30,367 - atoC DVUA0024 0.59 -0.6
30,441 + atoC DVUA0024 0.66 +0.0
30,488 + atoC DVUA0024 0.70 -1.0
30,501 - atoC DVUA0024 0.71 -0.1
30,587 + atoC DVUA0024 0.79 -0.4

Or see this region's nucleotide sequence