Experiment: MoYLS4 no iron
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fbp and DVU1842 are separated by 92 nucleotides DVU1842 and DVU1843 are separated by 45 nucleotides DVU1843 and DVU1844 overlap by 17 nucleotides
DVU1841: fbp - fructose-1,6-bisphosphatase (TIGR), at 1,911,438 to 1,912,451
fbp
DVU1842: DVU1842 - lipoprotein, putative (TIGR), at 1,912,544 to 1,913,500
DVU1842
DVU1843: DVU1843 - hypothetical protein (TIGR), at 1,913,546 to 1,914,499
DVU1843
DVU1844: DVU1844 - septum formation initiator family protein (TIGR), at 1,914,483 to 1,914,812
DVU1844
Position (kb)
1912
1913
1914 Strain fitness (log2 ratio)
-2
-1
0
1 at 1911.766 kb on + strand, within fbp at 1911.774 kb on - strand, within fbp at 1912.219 kb on - strand, within fbp at 1912.322 kb on + strand, within fbp at 1912.363 kb on - strand at 1912.383 kb on - strand at 1912.477 kb on - strand at 1912.503 kb on - strand at 1912.582 kb on + strand at 1912.648 kb on + strand, within DVU1842 at 1912.757 kb on - strand, within DVU1842 at 1913.542 kb on + strand at 1913.738 kb on + strand, within DVU1843 at 1913.783 kb on - strand, within DVU1843 at 1913.823 kb on + strand, within DVU1843 at 1913.837 kb on - strand, within DVU1843 at 1914.110 kb on - strand, within DVU1843 at 1914.202 kb on + strand, within DVU1843 at 1914.270 kb on + strand, within DVU1843
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 no iron remove 1,911,766 + fbp DVU1841 0.32 -1.6 1,911,774 - fbp DVU1841 0.33 -1.3 1,912,219 - fbp DVU1841 0.77 +0.7 1,912,322 + fbp DVU1841 0.87 +0.3 1,912,363 - -0.7 1,912,383 - -0.3 1,912,477 - +0.1 1,912,503 - -0.3 1,912,582 + +0.0 1,912,648 + DVU1842 0.11 +0.6 1,912,757 - DVU1842 0.22 -0.8 1,913,542 + -0.1 1,913,738 + DVU1843 0.20 +0.1 1,913,783 - DVU1843 0.25 +0.1 1,913,823 + DVU1843 0.29 -2.0 1,913,837 - DVU1843 0.31 -0.4 1,914,110 - DVU1843 0.59 -0.3 1,914,202 + DVU1843 0.69 -1.4 1,914,270 + DVU1843 0.76 -0.1
Or see this region's nucleotide sequence