Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15805

Experiment: R2A with silver chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with silver chloride 1 mM
3,478,598	+				-0.8
3,478,598	+				-0.6
3,478,598	+				+1.2
3,478,599	-				-0.0
3,478,599	-				-0.3
3,478,599	-				-0.8
3,478,599	-				-0.0
3,478,599	-				+0.9
3,478,599	-				-0.2
3,478,599	-				-0.3
3,478,718	+		LRK54_RS15800	0.11	-1.7
3,478,718	+		LRK54_RS15800	0.11	-0.2
3,478,718	+		LRK54_RS15800	0.11	-0.3
3,478,718	+		LRK54_RS15800	0.11	-0.9
3,478,718	+		LRK54_RS15800	0.11	+0.3
3,478,718	+		LRK54_RS15800	0.11	+1.0
3,478,718	+		LRK54_RS15800	0.11	+0.4
3,478,719	-		LRK54_RS15800	0.11	-3.1
3,478,719	-		LRK54_RS15800	0.11	+0.7
3,478,719	-		LRK54_RS15800	0.11	-1.5
3,478,719	-		LRK54_RS15800	0.11	+3.0
3,478,719	-		LRK54_RS15800	0.11	+0.3
3,478,719	-		LRK54_RS15800	0.11	-2.5
3,478,789	-		LRK54_RS15800	0.19	+0.2
3,478,817	+		LRK54_RS15800	0.23	-0.3
3,478,817	+		LRK54_RS15800	0.23	+0.5
3,478,817	+		LRK54_RS15800	0.23	-0.1
3,478,818	-		LRK54_RS15800	0.23	+0.4
3,478,818	-		LRK54_RS15800	0.23	-0.3
3,478,818	-		LRK54_RS15800	0.23	+1.0
3,478,821	-		LRK54_RS15800	0.23	+1.4
3,478,821	-		LRK54_RS15800	0.23	-0.6
3,478,851	-		LRK54_RS15800	0.27	-0.0
3,478,916	+		LRK54_RS15800	0.35	-0.8
3,478,916	+		LRK54_RS15800	0.35	-0.5
3,478,916	+		LRK54_RS15800	0.35	-0.1
3,478,916	+		LRK54_RS15800	0.35	-0.1
3,478,916	+		LRK54_RS15800	0.35	+0.8
3,478,916	+		LRK54_RS15800	0.35	-1.0
3,478,916	+		LRK54_RS15800	0.35	+2.0
3,478,916	+		LRK54_RS15800	0.35	-2.3
3,478,916	+		LRK54_RS15800	0.35	-0.0
3,478,916	+		LRK54_RS15800	0.35	+0.1
3,478,917	-		LRK54_RS15800	0.35	+2.0
3,478,917	-		LRK54_RS15800	0.35	-2.1
3,478,917	-		LRK54_RS15800	0.35	+2.1
3,478,917	-		LRK54_RS15800	0.35	+0.5
3,478,917	-		LRK54_RS15800	0.35	-0.7
3,478,917	-		LRK54_RS15800	0.35	-0.0
3,478,917	-		LRK54_RS15800	0.35	-2.1
3,478,917	-		LRK54_RS15800	0.35	-0.9
3,478,917	-		LRK54_RS15800	0.35	-0.0
3,478,917	-		LRK54_RS15800	0.35	+1.0
3,478,917	-		LRK54_RS15800	0.35	-0.9
3,478,982	+		LRK54_RS15800	0.43	+0.6
3,478,982	+		LRK54_RS15800	0.43	-0.0
3,478,983	-		LRK54_RS15800	0.43	-0.8
3,478,983	-		LRK54_RS15800	0.43	-0.1
3,478,983	-		LRK54_RS15800	0.43	+0.2
3,479,027	+		LRK54_RS15800	0.48	+0.4
3,479,027	+		LRK54_RS15800	0.48	-0.6
3,479,028	-		LRK54_RS15800	0.48	+0.9
3,479,096	+		LRK54_RS15800	0.57	-0.3
3,479,096	+		LRK54_RS15800	0.57	-1.2
3,479,096	+		LRK54_RS15800	0.57	+1.0
3,479,096	+		LRK54_RS15800	0.57	+0.6
3,479,096	+		LRK54_RS15800	0.57	-0.8
3,479,096	+		LRK54_RS15800	0.57	+0.4
3,479,096	+		LRK54_RS15800	0.57	-1.2
3,479,096	+		LRK54_RS15800	0.57	-0.8
3,479,096	+		LRK54_RS15800	0.57	+0.4
3,479,096	+		LRK54_RS15800	0.57	-2.3
3,479,097	-		LRK54_RS15800	0.57	-1.5
3,479,097	-		LRK54_RS15800	0.57	+0.1
3,479,097	-		LRK54_RS15800	0.57	-1.9
3,479,097	-		LRK54_RS15800	0.57	-0.3
3,479,097	-		LRK54_RS15800	0.57	+0.2
3,479,097	-		LRK54_RS15800	0.57	-0.8
3,479,097	-		LRK54_RS15800	0.57	-0.6
3,479,097	-		LRK54_RS15800	0.57	-0.8
3,479,123	+		LRK54_RS15800	0.60	+1.4
3,479,123	+		LRK54_RS15800	0.60	+0.3
3,479,123	+		LRK54_RS15800	0.60	-0.6
3,479,124	-		LRK54_RS15800	0.60	-0.3
3,479,124	-		LRK54_RS15800	0.60	+0.5
3,479,124	-		LRK54_RS15800	0.60	-0.5
3,479,228	+		LRK54_RS15800	0.73	-0.3
3,479,228	+		LRK54_RS15800	0.73	+0.4
3,479,229	-		LRK54_RS15800	0.73	-0.3
3,479,229	-		LRK54_RS15800	0.73	-0.6
3,479,255	+		LRK54_RS15800	0.76	-0.5
3,479,255	+		LRK54_RS15800	0.76	+0.8
3,479,256	-		LRK54_RS15800	0.76	-0.5
3,479,256	-		LRK54_RS15800	0.76	-1.8
3,479,256	-		LRK54_RS15800	0.76	+0.4
3,479,485	+				+0.1
3,479,486	-				-1.7
3,479,523	+				+0.3
3,479,575	+				-0.0
3,479,575	+				-0.0
3,479,575	+				-0.9
3,479,575	+				+0.0
3,479,576	-				+0.5
3,479,576	-				+0.1
3,479,587	+				-0.8
3,479,587	+				+1.2
3,479,588	-				-1.8
3,479,588	-				+0.7
3,479,588	-				-0.1
3,479,588	-				-2.0
3,479,588	-				-1.2
3,479,647	+		LRK54_RS15805	0.20	+1.0
3,479,647	+		LRK54_RS15805	0.20	+0.3
3,479,647	+		LRK54_RS15805	0.20	+0.5
3,479,647	+		LRK54_RS15805	0.20	-0.2
3,479,648	-		LRK54_RS15805	0.21	-2.4
3,479,648	-		LRK54_RS15805	0.21	+0.7
3,479,648	-		LRK54_RS15805	0.21	-0.4
3,479,686	-		LRK54_RS15805	0.35	-1.9
3,479,703	+		LRK54_RS15805	0.41	-1.0
3,479,704	-		LRK54_RS15805	0.42	-0.0
3,479,704	-		LRK54_RS15805	0.42	-0.9
3,479,768	+		LRK54_RS15805	0.66	+0.3
3,479,768	+		LRK54_RS15805	0.66	+1.4
3,479,768	+		LRK54_RS15805	0.66	+0.1
3,479,768	+		LRK54_RS15805	0.66	+1.0
3,479,768	+		LRK54_RS15805	0.66	+0.2
3,479,768	+		LRK54_RS15805	0.66	-1.2
3,479,768	+		LRK54_RS15805	0.66	-1.2
3,479,768	+		LRK54_RS15805	0.66	+1.1
3,479,768	+		LRK54_RS15805	0.66	-1.3
3,479,768	+		LRK54_RS15805	0.66	+1.1
3,479,768	+		LRK54_RS15805	0.66	-0.1
3,479,768	+		LRK54_RS15805	0.66	-0.1
3,479,768	+		LRK54_RS15805	0.66	-2.2
3,479,768	+		LRK54_RS15805	0.66	-1.2
3,479,768	+		LRK54_RS15805	0.66	+1.0
3,479,769	-		LRK54_RS15805	0.66	+0.0
3,479,769	-		LRK54_RS15805	0.66	-2.0
3,479,769	-		LRK54_RS15805	0.66	-2.2
3,479,769	-		LRK54_RS15805	0.66	+0.2
3,479,769	-		LRK54_RS15805	0.66	-0.3
3,479,769	-		LRK54_RS15805	0.66	-1.5
3,479,769	-		LRK54_RS15805	0.66	-1.0
3,479,769	-		LRK54_RS15805	0.66	-3.0
3,479,769	-		LRK54_RS15805	0.66	-0.8
3,479,769	-		LRK54_RS15805	0.66	-1.2
3,479,769	-		LRK54_RS15805	0.66	-0.4
3,479,769	-		LRK54_RS15805	0.66	-1.7
3,479,769	-		LRK54_RS15805	0.66	-0.9
3,479,795	+		LRK54_RS15805	0.76	-0.6
3,479,795	+		LRK54_RS15805	0.76	-0.3
3,479,795	+		LRK54_RS15805	0.76	-1.3
3,479,795	+		LRK54_RS15805	0.76	+0.5
3,479,795	+		LRK54_RS15805	0.76	-1.0
3,479,795	+		LRK54_RS15805	0.76	-0.6
3,479,795	+		LRK54_RS15805	0.76	+0.9
3,479,796	-		LRK54_RS15805	0.76	-1.3
3,479,796	-		LRK54_RS15805	0.76	-1.2
3,479,796	-		LRK54_RS15805	0.76	-0.6
3,479,796	-		LRK54_RS15805	0.76	+1.1
3,479,796	-		LRK54_RS15805	0.76	+0.4
3,479,796	-		LRK54_RS15805	0.76	-0.5
3,479,796	-		LRK54_RS15805	0.76	+0.3
3,479,796	-		LRK54_RS15805	0.76	+0.3
3,479,836	+				-1.2
3,479,836	+				-3.1
3,479,836	+				+1.6
3,479,836	+				-0.1
3,479,836	+				+3.0
3,479,837	-				-0.9
3,479,837	-				+0.1
3,479,837	-				+0.7
3,479,837	-				-0.6
3,479,837	-				-0.1
3,479,837	-				-1.1
3,479,837	-				-0.6
3,479,837	-				+1.0
3,479,837	-				+0.3
3,479,839	+				-0.3
3,479,839	+				-0.3
3,479,839	+				-0.4
3,479,839	+				-0.2
3,479,839	+				+1.7
3,479,839	+				-1.0
3,479,839	+				+0.4
3,479,840	-				-1.9
3,479,840	-				+0.4
3,479,840	-				-1.6
3,479,840	-				-2.1
3,479,947	+				-0.6
3,479,947	+				-2.0
3,479,947	+				-1.0
3,479,947	+				+0.1
3,479,947	+				-0.7
3,479,947	+				-0.1
3,479,947	+				+0.7
3,479,947	+				+0.4
3,479,947	+				-1.1
3,479,947	+				+1.2
3,479,947	+				+1.4
3,479,947	+				-0.3
3,479,947	+				+1.4
3,479,947	+				+3.0
3,479,947	+				+0.1
3,479,948	-				-1.3
3,479,948	-				-1.3
3,479,948	-				+1.0
3,479,948	-				+0.2
3,479,948	-				-0.3
3,479,948	-				+1.0
3,479,948	-				-2.3
3,479,948	-				-2.0
3,479,948	-				+0.3
3,479,948	-				+1.1
3,479,948	-				+1.0
3,479,948	-				+0.1
3,479,948	-				-0.6
3,479,948	-				+0.4
3,479,948	-				-0.3
3,479,948	-				-0.6
3,479,948	-				-0.3
3,479,948	-				-0.6
3,479,948	-				-0.3
3,479,948	-				-0.1
3,479,948	-				+1.6
3,479,948	-				-2.3
3,479,948	-				-0.1
3,479,948	-				-1.7
3,480,016	+		LRK54_RS15810	0.23	+1.3
3,480,016	+		LRK54_RS15810	0.23	+1.0
3,480,016	+		LRK54_RS15810	0.23	+0.1
3,480,016	+		LRK54_RS15810	0.23	-0.8
3,480,017	-		LRK54_RS15810	0.23	-0.8
3,480,017	-		LRK54_RS15810	0.23	+2.0
3,480,017	-		LRK54_RS15810	0.23	-2.4
3,480,017	-		LRK54_RS15810	0.23	+0.4
3,480,030	+		LRK54_RS15810	0.27	+0.7
3,480,245	+				-0.5
3,480,265	+				-0.2
3,480,265	+				-1.3
3,480,298	+				-0.6
3,480,299	-				-0.0
3,480,310	+				-1.0
3,480,311	-				-0.0
3,480,320	+				-1.9
3,480,320	+				-0.3
3,480,321	-				-1.8
3,480,328	-				+2.7
3,480,328	-				-1.7
3,480,383	+				-0.3
3,480,383	+				-1.0
3,480,384	-				+1.6
3,480,384	-				-1.0
3,480,474	+		LRK54_RS15815	0.11	+0.7
3,480,474	+		LRK54_RS15815	0.11	+0.1
3,480,475	-		LRK54_RS15815	0.11	-0.7
3,480,475	-		LRK54_RS15815	0.11	-0.9
3,480,475	-		LRK54_RS15815	0.11	+0.3
3,480,483	+		LRK54_RS15815	0.11	-1.8
3,480,484	-		LRK54_RS15815	0.11	-0.2
3,480,484	-		LRK54_RS15815	0.11	-1.3
3,480,484	-		LRK54_RS15815	0.11	-0.8
3,480,484	-		LRK54_RS15815	0.11	-1.5
3,480,507	+		LRK54_RS15815	0.13	+1.4
3,480,507	+		LRK54_RS15815	0.13	-1.4
3,480,507	+		LRK54_RS15815	0.13	-1.3
3,480,507	+		LRK54_RS15815	0.13	+0.3
3,480,508	-		LRK54_RS15815	0.13	+1.2
3,480,508	-		LRK54_RS15815	0.13	-0.4
3,480,508	-		LRK54_RS15815	0.13	-0.8
3,480,519	+		LRK54_RS15815	0.13	-0.1
3,480,520	-		LRK54_RS15815	0.14	-0.0
3,480,631	-		LRK54_RS15815	0.20	-0.0
3,480,665	-		LRK54_RS15815	0.22	-1.3
3,480,677	+		LRK54_RS15815	0.22	+0.3
3,480,677	+		LRK54_RS15815	0.22	-0.0
3,480,677	+		LRK54_RS15815	0.22	-1.7
3,480,678	-		LRK54_RS15815	0.22	-0.7
3,480,678	-		LRK54_RS15815	0.22	+0.4
3,480,732	+		LRK54_RS15815	0.25	+0.4
3,480,733	-		LRK54_RS15815	0.25	-1.4
3,480,768	+		LRK54_RS15815	0.27	-0.9
3,480,768	+		LRK54_RS15815	0.27	-1.3
3,480,769	-		LRK54_RS15815	0.27	-0.6
3,480,769	-		LRK54_RS15815	0.27	-0.6
3,480,769	-		LRK54_RS15815	0.27	-1.1
3,480,769	-		LRK54_RS15815	0.27	+1.1
3,480,849	+		LRK54_RS15815	0.32	-0.8
3,480,849	+		LRK54_RS15815	0.32	-0.3
3,480,849	+		LRK54_RS15815	0.32	+1.6
3,480,850	-		LRK54_RS15815	0.32	-1.3
3,480,850	-		LRK54_RS15815	0.32	+0.6