Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13280

Experiment: R2A with silver chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with silver chloride 1 mM
2,979,659	+		LRK54_RS13275	0.57	-0.9
2,979,697	+		LRK54_RS13275	0.59	-0.7
2,979,698	-		LRK54_RS13275	0.59	-0.4
2,979,803	+		LRK54_RS13275	0.64	-0.7
2,979,804	-		LRK54_RS13275	0.64	+0.3
2,979,804	-		LRK54_RS13275	0.64	+0.6
2,979,804	-		LRK54_RS13275	0.64	-0.1
2,979,804	-		LRK54_RS13275	0.64	-0.5
2,979,815	+		LRK54_RS13275	0.64	-1.2
2,979,815	+		LRK54_RS13275	0.64	+1.4
2,979,815	+		LRK54_RS13275	0.64	+1.9
2,979,815	+		LRK54_RS13275	0.64	-0.3
2,979,815	+		LRK54_RS13275	0.64	-1.4
2,979,815	+		LRK54_RS13275	0.64	-0.9
2,979,815	+		LRK54_RS13275	0.64	-2.1
2,979,815	+		LRK54_RS13275	0.64	-0.1
2,979,815	+		LRK54_RS13275	0.64	-0.7
2,979,816	-		LRK54_RS13275	0.64	+1.1
2,979,816	-		LRK54_RS13275	0.64	-0.8
2,979,816	-		LRK54_RS13275	0.64	-0.2
2,979,816	-		LRK54_RS13275	0.64	+0.3
2,979,816	-		LRK54_RS13275	0.64	-0.1
2,979,816	-		LRK54_RS13275	0.64	-0.8
2,979,816	-		LRK54_RS13275	0.64	-0.2
2,979,816	-		LRK54_RS13275	0.64	-0.6
2,979,816	-		LRK54_RS13275	0.64	+0.7
2,979,819	-		LRK54_RS13275	0.64	-0.0
2,979,845	+		LRK54_RS13275	0.66	-2.6
2,979,845	+		LRK54_RS13275	0.66	-0.2
2,979,845	+		LRK54_RS13275	0.66	-2.1
2,979,845	+		LRK54_RS13275	0.66	+0.3
2,979,845	+		LRK54_RS13275	0.66	+1.5
2,979,845	+		LRK54_RS13275	0.66	+0.3
2,979,845	+		LRK54_RS13275	0.66	+0.6
2,979,845	+		LRK54_RS13275	0.66	-1.8
2,979,845	+		LRK54_RS13275	0.66	-0.6
2,979,846	-		LRK54_RS13275	0.66	+0.3
2,979,846	-		LRK54_RS13275	0.66	-0.9
2,979,846	-		LRK54_RS13275	0.66	+1.5
2,979,846	-		LRK54_RS13275	0.66	+0.8
2,979,846	-		LRK54_RS13275	0.66	+0.3
2,979,846	-		LRK54_RS13275	0.66	+1.9
2,979,846	-		LRK54_RS13275	0.66	-0.8
2,979,846	-		LRK54_RS13275	0.66	+0.7
2,979,846	-		LRK54_RS13275	0.66	-1.8
2,979,846	-		LRK54_RS13275	0.66	-0.6
2,979,846	-		LRK54_RS13275	0.66	+0.4
2,979,875	+		LRK54_RS13275	0.67	+0.7
2,979,875	+		LRK54_RS13275	0.67	-1.7
2,979,875	+		LRK54_RS13275	0.67	-1.0
2,979,875	+		LRK54_RS13275	0.67	-1.1
2,979,875	+		LRK54_RS13275	0.67	-0.9
2,979,875	+		LRK54_RS13275	0.67	-0.6
2,979,875	+		LRK54_RS13275	0.67	-1.9
2,979,875	+		LRK54_RS13275	0.67	-0.2
2,979,875	+		LRK54_RS13275	0.67	-1.2
2,979,875	+		LRK54_RS13275	0.67	-1.4
2,979,876	-		LRK54_RS13275	0.67	-1.4
2,980,010	+		LRK54_RS13275	0.74	-0.4
2,980,010	+		LRK54_RS13275	0.74	+0.6
2,980,011	-		LRK54_RS13275	0.74	+0.5
2,980,022	+		LRK54_RS13275	0.74	-1.4
2,980,022	+		LRK54_RS13275	0.74	-0.2
2,980,022	+		LRK54_RS13275	0.74	+0.2
2,980,023	-		LRK54_RS13275	0.74	-0.1
2,980,023	-		LRK54_RS13275	0.74	-1.7
2,980,023	-		LRK54_RS13275	0.74	+0.9
2,980,023	-		LRK54_RS13275	0.74	+0.1
2,980,028	+		LRK54_RS13275	0.74	-0.1
2,980,028	+		LRK54_RS13275	0.74	-0.8
2,980,028	+		LRK54_RS13275	0.74	-0.3
2,980,028	+		LRK54_RS13275	0.74	+0.3
2,980,028	+		LRK54_RS13275	0.74	-0.4
2,980,028	+		LRK54_RS13275	0.74	+1.1
2,980,028	+		LRK54_RS13275	0.74	+0.3
2,980,028	+		LRK54_RS13275	0.74	+1.2
2,980,028	+		LRK54_RS13275	0.74	-2.2
2,980,029	-		LRK54_RS13275	0.74	-1.8
2,980,029	-		LRK54_RS13275	0.74	+1.1
2,980,029	-		LRK54_RS13275	0.74	-0.2
2,980,029	-		LRK54_RS13275	0.74	+1.9
2,980,029	-		LRK54_RS13275	0.74	-1.1
2,980,029	-		LRK54_RS13275	0.74	-0.1
2,980,029	-		LRK54_RS13275	0.74	-2.2
2,980,115	+		LRK54_RS13275	0.79	-1.2
2,980,115	+		LRK54_RS13275	0.79	-1.1
2,980,115	+		LRK54_RS13275	0.79	+0.3
2,980,115	+		LRK54_RS13275	0.79	-1.8
2,980,115	+		LRK54_RS13275	0.79	+1.3
2,980,116	-		LRK54_RS13275	0.79	-0.0
2,980,160	-		LRK54_RS13275	0.81	-0.1
2,980,174	+		LRK54_RS13275	0.81	-0.1
2,980,174	+		LRK54_RS13275	0.81	-0.3
2,980,174	+		LRK54_RS13275	0.81	+2.9
2,980,175	-		LRK54_RS13275	0.81	-1.9
2,980,175	-		LRK54_RS13275	0.81	-0.3
2,980,175	-		LRK54_RS13275	0.81	-0.1
2,980,235	+		LRK54_RS13275	0.84	-1.4
2,980,235	+		LRK54_RS13275	0.84	-0.7
2,980,235	+		LRK54_RS13275	0.84	+0.4
2,980,235	+		LRK54_RS13275	0.84	+0.9
2,980,236	-		LRK54_RS13275	0.84	+0.0
2,980,236	-		LRK54_RS13275	0.84	+1.1
2,980,236	-		LRK54_RS13275	0.84	-0.4
2,980,236	-		LRK54_RS13275	0.84	-1.8
2,980,325	-		LRK54_RS13275	0.89	-0.3
2,980,325	-		LRK54_RS13275	0.89	-0.1
2,980,325	-		LRK54_RS13275	0.89	+0.3
2,980,325	-		LRK54_RS13275	0.89	+1.9
2,980,347	-		LRK54_RS13275	0.90	+1.2
2,980,369	+				-0.1
2,980,370	-				+0.1
2,980,370	-				+0.3
2,980,406	+				+0.1
2,980,407	-				+0.4
2,980,535	+				+1.3
2,980,535	+				-0.1
2,980,535	+				-0.1
2,980,536	-				+0.3
2,980,536	-				-0.7
2,980,536	-				+0.9
2,980,536	-				-0.2
2,980,536	-				-1.8
2,980,560	+				-0.4
2,980,560	+				-1.2
2,980,560	+				-0.1
2,980,560	+				-0.4
2,980,560	+				-0.7
2,980,560	+				-0.2
2,980,560	+				-0.2
2,980,560	+				-0.0
2,980,560	+				+0.3
2,980,560	+				-1.9
2,980,560	+				-0.0
2,980,560	+				+1.3
2,980,560	+				-0.1
2,980,560	+				-0.7
2,980,560	+				-0.4
2,980,560	+				+0.8
2,980,561	-				-0.9
2,980,561	-				-2.2
2,980,561	-				-0.7
2,980,561	-				+0.2
2,980,561	-				-1.0
2,980,561	-				-0.5
2,980,561	-				-1.3
2,980,561	-				-1.1
2,980,561	-				-1.8
2,980,561	-				-1.9
2,980,561	-				+0.4
2,980,561	-				+0.1
2,980,561	-				+0.7
2,980,561	-				+1.0
2,980,561	-				-0.2
2,980,561	-				-0.9
2,980,561	-				+0.1
2,980,561	-				-0.7
2,980,561	-				-1.2
2,980,561	-				-1.4
2,980,561	-				-0.9
2,980,561	-				-0.9
2,980,561	-				+1.9
2,980,611	+				-0.3
2,980,611	+				-0.7
2,980,611	+				-0.7
2,980,611	+				+1.4
2,980,611	+				+0.9
2,980,611	+				+0.2
2,980,611	+				+0.2
2,980,611	+				-0.3
2,980,611	+				+0.8
2,980,611	+				-0.4
2,980,612	-				-1.5
2,980,612	-				-0.5
2,980,612	-				-3.2
2,980,612	-				-1.4
2,980,612	-				-1.2
2,980,612	-				-0.6
2,980,612	-				-0.2
2,980,612	-				+0.1
2,980,612	-				-0.0
2,980,612	-				-0.6
2,980,612	-				+0.5
2,980,612	-				+0.3
2,980,612	-				+0.6
2,980,612	-				-0.4
2,980,612	-				-0.6
2,980,612	-				-1.1
2,980,645	+				-0.5
2,980,645	+				+0.7
2,980,646	-				-0.7
2,980,646	-				+0.2
2,980,743	+				+0.7
2,980,744	+				-0.1
2,980,744	+				+0.8
2,980,744	+				+0.2
2,980,745	-				-1.2
2,980,745	-				-0.4
2,980,745	-				-2.7
2,980,745	-				+0.8
2,980,745	-				+0.9
2,980,745	-				+0.3
2,980,815	-		LRK54_RS13280	0.15	-1.7
2,980,901	+		LRK54_RS13280	0.21	+1.2
2,980,901	+		LRK54_RS13280	0.21	-0.1
2,980,901	+		LRK54_RS13280	0.21	+0.3
2,980,901	+		LRK54_RS13280	0.21	-1.6
2,980,901	+		LRK54_RS13280	0.21	-0.1
2,980,902	-		LRK54_RS13280	0.21	-0.1
2,980,902	-		LRK54_RS13280	0.21	-0.9
2,980,902	-		LRK54_RS13280	0.21	-0.9
2,980,911	+		LRK54_RS13280	0.22	-1.5
2,980,911	+		LRK54_RS13280	0.22	-0.3
2,980,911	+		LRK54_RS13280	0.22	+0.2
2,980,911	+		LRK54_RS13280	0.22	+0.0
2,980,911	+		LRK54_RS13280	0.22	+0.3
2,980,911	+		LRK54_RS13280	0.22	-0.1
2,980,911	+		LRK54_RS13280	0.22	-0.7
2,980,911	+		LRK54_RS13280	0.22	+0.0
2,980,911	+		LRK54_RS13280	0.22	-0.7
2,980,911	+		LRK54_RS13280	0.22	-1.1
2,980,912	-		LRK54_RS13280	0.22	+0.2
2,980,912	-		LRK54_RS13280	0.22	-1.2
2,980,912	-		LRK54_RS13280	0.22	+1.0
2,980,912	-		LRK54_RS13280	0.22	-1.9
2,980,912	-		LRK54_RS13280	0.22	-1.8
2,980,912	-		LRK54_RS13280	0.22	-0.3
2,980,912	-		LRK54_RS13280	0.22	+1.3
2,980,912	-		LRK54_RS13280	0.22	+0.8
2,980,912	-		LRK54_RS13280	0.22	+1.8
2,980,912	-		LRK54_RS13280	0.22	-1.5
2,980,989	+		LRK54_RS13280	0.28	+1.5
2,980,989	+		LRK54_RS13280	0.28	-2.0
2,980,989	+		LRK54_RS13280	0.28	+1.9
2,980,990	-		LRK54_RS13280	0.28	-0.4
2,981,193	+		LRK54_RS13280	0.44	+0.2
2,981,193	+		LRK54_RS13280	0.44	-0.7
2,981,193	+		LRK54_RS13280	0.44	-1.5
2,981,193	+		LRK54_RS13280	0.44	-0.4
2,981,193	+		LRK54_RS13280	0.44	-0.1
2,981,193	+		LRK54_RS13280	0.44	-0.7
2,981,194	-		LRK54_RS13280	0.44	-2.4
2,981,194	-		LRK54_RS13280	0.44	+1.4
2,981,194	-		LRK54_RS13280	0.44	+0.9
2,981,194	-		LRK54_RS13280	0.44	+0.9
2,981,194	-		LRK54_RS13280	0.44	-0.1
2,981,194	-		LRK54_RS13280	0.44	+2.3
2,981,262	+		LRK54_RS13280	0.50	+0.9
2,981,263	-		LRK54_RS13280	0.50	-1.4
2,981,263	-		LRK54_RS13280	0.50	-0.7
2,981,263	-		LRK54_RS13280	0.50	+0.6
2,981,263	-		LRK54_RS13280	0.50	-0.1
2,981,263	-		LRK54_RS13280	0.50	+0.8
2,981,263	-		LRK54_RS13280	0.50	+0.6
2,981,554	-		LRK54_RS13280	0.73	-0.9
2,981,554	-		LRK54_RS13280	0.73	-2.4
2,981,670	+		LRK54_RS13280	0.82	-0.9
2,981,670	+		LRK54_RS13280	0.82	-1.2
2,981,670	+		LRK54_RS13280	0.82	+0.1
2,981,671	-		LRK54_RS13280	0.82	-0.1
2,981,671	-		LRK54_RS13280	0.82	-0.4
2,981,687	+		LRK54_RS13280	0.83	-1.2
2,981,687	+		LRK54_RS13280	0.83	-1.3
2,981,687	+		LRK54_RS13280	0.83	-2.8
2,981,687	+		LRK54_RS13280	0.83	-0.4
2,981,687	+		LRK54_RS13280	0.83	+1.3
2,981,687	+		LRK54_RS13280	0.83	-0.3
2,981,687	+		LRK54_RS13280	0.83	-0.2
2,981,687	+		LRK54_RS13280	0.83	+0.1
2,981,688	-		LRK54_RS13280	0.83	-1.2
2,981,688	-		LRK54_RS13280	0.83	-0.1
2,981,688	-		LRK54_RS13280	0.83	+0.0
2,981,688	-		LRK54_RS13280	0.83	-1.2
2,981,688	-		LRK54_RS13280	0.83	+0.9
2,981,688	-		LRK54_RS13280	0.83	-0.1
2,981,688	-		LRK54_RS13280	0.83	+0.2
2,981,688	-		LRK54_RS13280	0.83	-0.8
2,981,688	-		LRK54_RS13280	0.83	-0.0
2,981,834	+				+0.3
2,981,834	+				+2.9
2,981,834	+				+2.7
2,981,834	+				-1.1
2,981,834	+				+0.1
2,981,834	+				+1.7
2,981,834	+				-0.7
2,981,834	+				-1.9
2,981,835	-				-1.0
2,981,835	-				-1.1
2,981,835	-				-1.0
2,981,835	-				+0.1
2,981,835	-				-0.7
2,981,835	-				+1.9
2,981,835	-				-1.7
2,981,835	-				-0.6
2,981,835	-				-1.5
2,981,835	-				-2.5
2,981,835	-				+0.3
2,981,835	-				-0.8
2,981,835	-				-0.9
2,981,874	+				+1.1
2,981,875	-				+1.6
2,981,894	+				-0.0
2,981,895	-				-0.4
2,981,932	+				-0.9
2,981,932	+				+0.3
2,981,933	-				+0.6
2,981,933	-				+0.6
2,981,977	+				-1.0
2,982,025	+				+0.2
2,982,159	+		LRK54_RS13285	0.15	+1.2
2,982,159	+		LRK54_RS13285	0.15	+1.1
2,982,159	+		LRK54_RS13285	0.15	-0.8
2,982,159	+		LRK54_RS13285	0.15	-0.6
2,982,159	+		LRK54_RS13285	0.15	+0.9
2,982,159	+		LRK54_RS13285	0.15	-0.4
2,982,160	-		LRK54_RS13285	0.15	+1.4
2,982,160	-		LRK54_RS13285	0.15	-0.5
2,982,160	-		LRK54_RS13285	0.15	-1.3
2,982,160	-		LRK54_RS13285	0.15	+0.5
2,982,160	-		LRK54_RS13285	0.15	-2.3
2,982,160	-		LRK54_RS13285	0.15	+2.6
2,982,286	+		LRK54_RS13285	0.28	-1.2
2,982,286	+		LRK54_RS13285	0.28	-1.8
2,982,286	+		LRK54_RS13285	0.28	+1.9
2,982,286	+		LRK54_RS13285	0.28	+1.5
2,982,286	+		LRK54_RS13285	0.28	-1.0
2,982,286	+		LRK54_RS13285	0.28	+0.9
2,982,286	+		LRK54_RS13285	0.28	-2.2
2,982,287	-		LRK54_RS13285	0.28	-0.1
2,982,287	-		LRK54_RS13285	0.28	-1.2
2,982,370	+		LRK54_RS13285	0.37	+0.4
2,982,370	+		LRK54_RS13285	0.37	-1.2
2,982,370	+		LRK54_RS13285	0.37	+1.5
2,982,371	-		LRK54_RS13285	0.37	-0.9
2,982,371	-		LRK54_RS13285	0.37	-0.4
2,982,371	-		LRK54_RS13285	0.37	-0.5
2,982,371	-		LRK54_RS13285	0.37	-2.9
2,982,371	-		LRK54_RS13285	0.37	+0.6
2,982,371	-		LRK54_RS13285	0.37	+1.5
2,982,371	-		LRK54_RS13285	0.37	-2.3
2,982,371	-		LRK54_RS13285	0.37	+0.3
2,982,371	-		LRK54_RS13285	0.37	+0.2
2,982,371	-		LRK54_RS13285	0.37	+0.9
2,982,371	-		LRK54_RS13285	0.37	+0.7
2,982,371	-		LRK54_RS13285	0.37	-2.4
2,982,408	+		LRK54_RS13285	0.41	-0.7
2,982,523	+		LRK54_RS13285	0.54	+0.7
2,982,523	+		LRK54_RS13285	0.54	-0.1
2,982,523	+		LRK54_RS13285	0.54	-0.8
2,982,523	+		LRK54_RS13285	0.54	+0.9
2,982,523	+		LRK54_RS13285	0.54	-1.6
2,982,523	+		LRK54_RS13285	0.54	-2.0
2,982,523	+		LRK54_RS13285	0.54	-0.1
2,982,523	+		LRK54_RS13285	0.54	+0.2
2,982,523	+		LRK54_RS13285	0.54	-0.5
2,982,523	+		LRK54_RS13285	0.54	+0.2
2,982,523	+		LRK54_RS13285	0.54	-0.2
2,982,523	+		LRK54_RS13285	0.54	-0.4
2,982,523	+		LRK54_RS13285	0.54	-0.2
2,982,524	-		LRK54_RS13285	0.54	+0.3
2,982,524	-		LRK54_RS13285	0.54	-0.3
2,982,524	-		LRK54_RS13285	0.54	-0.1
2,982,524	-		LRK54_RS13285	0.54	-0.7
2,982,524	-		LRK54_RS13285	0.54	+0.9
2,982,524	-		LRK54_RS13285	0.54	-0.2
2,982,524	-		LRK54_RS13285	0.54	-2.1
2,982,524	-		LRK54_RS13285	0.54	+0.8
2,982,524	-		LRK54_RS13285	0.54	-0.7
2,982,524	-		LRK54_RS13285	0.54	-0.1
2,982,524	-		LRK54_RS13285	0.54	-0.5
2,982,524	-		LRK54_RS13285	0.54	-0.7
2,982,524	-		LRK54_RS13285	0.54	-2.2
2,982,524	-		LRK54_RS13285	0.54	-2.2
2,982,627	+		LRK54_RS13285	0.65	+0.3
2,982,627	+		LRK54_RS13285	0.65	+0.1
2,982,868	+				-1.5