Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07710

Experiment: R2A with silver chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with silver chloride 1 mM
1,675,047	+		LRK54_RS07705	0.59	-0.5
1,675,047	+		LRK54_RS07705	0.59	-0.5
1,675,047	+		LRK54_RS07705	0.59	+0.7
1,675,167	+		LRK54_RS07705	0.70	-0.3
1,675,167	+		LRK54_RS07705	0.70	-2.8
1,675,167	+		LRK54_RS07705	0.70	-1.6
1,675,168	-		LRK54_RS07705	0.70	-1.4
1,675,290	+		LRK54_RS07705	0.81	+0.9
1,675,290	+		LRK54_RS07705	0.81	-1.3
1,675,291	-		LRK54_RS07705	0.81	+0.1
1,675,291	-		LRK54_RS07705	0.81	+1.7
1,675,291	-		LRK54_RS07705	0.81	+1.3
1,675,299	+		LRK54_RS07705	0.82	-0.1
1,675,299	+		LRK54_RS07705	0.82	-1.1
1,675,299	+		LRK54_RS07705	0.82	-2.2
1,675,299	+		LRK54_RS07705	0.82	-0.5
1,675,299	+		LRK54_RS07705	0.82	+1.3
1,675,300	-		LRK54_RS07705	0.82	+1.6
1,675,300	-		LRK54_RS07705	0.82	-1.0
1,675,300	-		LRK54_RS07705	0.82	-1.4
1,675,300	-		LRK54_RS07705	0.82	+0.3
1,675,300	-		LRK54_RS07705	0.82	+0.4
1,675,300	-		LRK54_RS07705	0.82	-1.0
1,675,300	-		LRK54_RS07705	0.82	-2.0
1,675,652	+				+0.9
1,675,652	+				+2.8
1,675,652	+				+0.4
1,675,652	+				-2.1
1,675,652	+				-1.8
1,675,652	+				+1.5
1,675,652	+				-1.7
1,675,652	+				-1.0
1,675,652	+				+0.2
1,675,652	+				-1.7
1,675,652	+				-1.1
1,675,652	+				-2.8
1,675,652	+				-3.4
1,675,652	+				-1.0
1,675,653	-				-1.3
1,675,653	-				-2.4
1,675,653	-				+0.9
1,675,653	-				+0.3
1,675,653	-				-0.7
1,675,653	-				-0.5
1,675,653	-				-2.3
1,675,653	-				+0.8
1,675,653	-				+0.9
1,675,692	+				+1.4
1,675,692	+				+0.3
1,675,692	+				-2.5
1,675,692	+				-0.1
1,675,693	-				-1.0
1,675,693	-				-0.1
1,675,715	+				+1.1
1,675,715	+				-1.4
1,675,715	+				-2.5
1,675,715	+				+0.9
1,675,715	+				+1.9
1,675,715	+				-0.1
1,675,715	+				-0.3
1,675,715	+				-2.2
1,675,715	+				+0.3
1,675,715	+				-0.3
1,675,715	+				-2.1
1,675,715	+				-0.8
1,675,715	+				+0.0
1,675,715	+				-0.5
1,675,715	+				-1.3
1,675,715	+				-0.1
1,675,715	+				+1.1
1,675,715	+				-2.1
1,675,715	+				-0.4
1,675,715	+				+0.9
1,675,715	+				-1.5
1,675,715	+				-0.4
1,675,715	+				-0.1
1,675,715	+				-0.6
1,675,715	+				-1.7
1,675,715	+				-0.8
1,675,715	+				+1.1
1,675,715	+				-0.9
1,675,715	+				-1.8
1,675,715	+				-1.0
1,675,715	+				-1.1
1,675,715	+				-0.5
1,675,715	+				-0.3
1,675,715	+				-2.1
1,675,715	+				-0.1
1,675,715	+				+1.9
1,675,715	+				-1.3
1,675,715	+				-0.9
1,675,715	+				-1.0
1,675,715	+				-1.0
1,675,715	+				-0.6
1,675,715	+				+0.4
1,675,715	+				-3.1
1,675,715	+				-1.1
1,675,715	+				-0.1
1,675,715	+				-0.7
1,675,715	+				-1.3
1,675,715	+				-1.1
1,675,716	-				+0.7
1,675,716	-				-0.7
1,675,716	-				-1.8
1,675,716	-				-1.5
1,675,716	-				+0.8
1,675,716	-				-0.5
1,675,716	-				-0.2
1,675,716	-				-0.2
1,675,716	-				+0.2
1,675,716	-				+1.4
1,675,716	-				-1.2
1,675,716	-				-1.5
1,675,716	-				+0.8
1,675,716	-				+0.6
1,675,716	-				-1.0
1,675,716	-				-0.5
1,675,716	-				+0.5
1,675,716	-				-0.7
1,675,716	-				+2.5
1,675,716	-				-1.3
1,675,716	-				+0.3
1,675,716	-				+0.2
1,675,716	-				-1.5
1,675,716	-				+1.3
1,675,716	-				-0.4
1,675,716	-				-1.9
1,675,716	-				+1.4
1,675,716	-				+0.3
1,675,716	-				-1.1
1,675,716	-				-1.6
1,675,716	-				-1.7
1,675,716	-				+0.3
1,675,716	-				+1.9
1,675,716	-				+1.3
1,675,716	-				-1.4
1,675,716	-				-1.0
1,675,716	-				-1.8
1,675,716	-				+0.8
1,675,716	-				+0.4
1,675,716	-				+0.5
1,675,716	-				-0.1
1,675,716	-				-0.1
1,675,723	+				-1.2
1,675,723	+				-1.1
1,675,723	+				-1.3
1,675,724	-				+0.3
1,675,724	-				-2.9
1,675,859	+				+0.6
1,675,859	+				-1.8
1,675,859	+				+0.5
1,675,859	+				+0.3
1,675,859	+				+0.9
1,675,859	+				-1.7
1,675,859	+				-0.5
1,675,859	+				-3.3
1,675,859	+				-0.7
1,675,859	+				-0.9
1,675,860	-				+0.1
1,675,860	-				+0.7
1,675,860	-				+0.0
1,675,860	-				-0.0
1,675,860	-				+0.0
1,675,860	-				+0.5
1,676,043	+				+1.0
1,676,043	+				-0.2
1,676,043	+				-0.3
1,676,043	+				+0.9
1,676,044	-				+1.6
1,676,044	-				-0.2
1,676,044	-				-0.5
1,676,044	-				-2.0
1,676,080	+		LRK54_RS07710	0.12	-0.7
1,676,081	-		LRK54_RS07710	0.12	-1.3
1,676,081	-		LRK54_RS07710	0.12	-0.7
1,676,081	-		LRK54_RS07710	0.12	-0.4
1,676,081	-		LRK54_RS07710	0.12	-0.4
1,676,081	-		LRK54_RS07710	0.12	+0.2
1,676,107	+		LRK54_RS07710	0.14	+0.4
1,676,107	+		LRK54_RS07710	0.14	+0.6
1,676,107	+		LRK54_RS07710	0.14	+2.4
1,676,107	+		LRK54_RS07710	0.14	+2.3
1,676,107	+		LRK54_RS07710	0.14	-2.6
1,676,107	+		LRK54_RS07710	0.14	-0.1
1,676,107	+		LRK54_RS07710	0.14	+0.9
1,676,107	+		LRK54_RS07710	0.14	+1.5
1,676,107	+		LRK54_RS07710	0.14	+1.7
1,676,107	+		LRK54_RS07710	0.14	-1.1
1,676,107	+		LRK54_RS07710	0.14	+0.3
1,676,108	-		LRK54_RS07710	0.14	+0.9
1,676,108	-		LRK54_RS07710	0.14	+1.2
1,676,108	-		LRK54_RS07710	0.14	-2.0
1,676,108	-		LRK54_RS07710	0.14	+1.5
1,676,108	-		LRK54_RS07710	0.14	+0.3
1,676,108	-		LRK54_RS07710	0.14	-1.0
1,676,108	-		LRK54_RS07710	0.14	+1.9
1,676,108	-		LRK54_RS07710	0.14	+0.3
1,676,108	-		LRK54_RS07710	0.14	-0.8
1,676,108	-		LRK54_RS07710	0.14	+1.6
1,676,108	-		LRK54_RS07710	0.14	-1.1
1,676,108	-		LRK54_RS07710	0.14	-0.1
1,676,108	-		LRK54_RS07710	0.14	+0.6
1,676,116	+		LRK54_RS07710	0.15	-2.2
1,676,116	+		LRK54_RS07710	0.15	+0.6
1,676,116	+		LRK54_RS07710	0.15	-1.5
1,676,116	+		LRK54_RS07710	0.15	-0.9
1,676,116	+		LRK54_RS07710	0.15	+0.9
1,676,117	-		LRK54_RS07710	0.15	+0.7
1,676,117	-		LRK54_RS07710	0.15	+0.5
1,676,117	-		LRK54_RS07710	0.15	+0.4
1,676,117	-		LRK54_RS07710	0.15	+0.6
1,676,117	-		LRK54_RS07710	0.15	-0.1
1,676,117	-		LRK54_RS07710	0.15	+1.3
1,676,317	+		LRK54_RS07710	0.30	-1.6
1,676,317	+		LRK54_RS07710	0.30	-0.8
1,676,317	+		LRK54_RS07710	0.30	-0.2
1,676,317	+		LRK54_RS07710	0.30	+1.0
1,676,318	-		LRK54_RS07710	0.30	+0.3
1,676,318	-		LRK54_RS07710	0.30	+0.5
1,676,318	-		LRK54_RS07710	0.30	+0.9
1,676,318	-		LRK54_RS07710	0.30	+1.5
1,676,318	-		LRK54_RS07710	0.30	+1.0
1,676,318	-		LRK54_RS07710	0.30	-2.1
1,676,527	+		LRK54_RS07710	0.46	+0.7
1,676,613	+		LRK54_RS07710	0.53	-1.9
1,676,613	+		LRK54_RS07710	0.53	-0.1
1,676,613	+		LRK54_RS07710	0.53	-1.3
1,676,613	+		LRK54_RS07710	0.53	-0.6
1,676,613	+		LRK54_RS07710	0.53	-0.9
1,676,613	+		LRK54_RS07710	0.53	+0.9
1,676,613	+		LRK54_RS07710	0.53	+0.3
1,676,614	-		LRK54_RS07710	0.53	-1.3
1,676,614	-		LRK54_RS07710	0.53	+2.3
1,676,614	-		LRK54_RS07710	0.53	-0.5
1,676,614	-		LRK54_RS07710	0.53	-2.1
1,676,614	-		LRK54_RS07710	0.53	+1.3
1,676,614	-		LRK54_RS07710	0.53	+0.3
1,676,614	-		LRK54_RS07710	0.53	-1.5
1,676,614	-		LRK54_RS07710	0.53	-1.3
1,676,614	-		LRK54_RS07710	0.53	+0.6
1,676,614	-		LRK54_RS07710	0.53	+2.6
1,676,614	-		LRK54_RS07710	0.53	-1.0
1,676,698	+		LRK54_RS07710	0.59	+1.1
1,676,698	+		LRK54_RS07710	0.59	-1.2
1,676,698	+		LRK54_RS07710	0.59	-0.6
1,676,698	+		LRK54_RS07710	0.59	+0.6
1,676,698	+		LRK54_RS07710	0.59	+0.9
1,676,698	+		LRK54_RS07710	0.59	-1.0
1,676,698	+		LRK54_RS07710	0.59	+0.2
1,676,698	+		LRK54_RS07710	0.59	+0.3
1,676,698	+		LRK54_RS07710	0.59	+1.3
1,676,698	+		LRK54_RS07710	0.59	+1.3
1,676,698	+		LRK54_RS07710	0.59	-2.0
1,676,698	+		LRK54_RS07710	0.59	+1.9
1,676,698	+		LRK54_RS07710	0.59	+0.9
1,676,698	+		LRK54_RS07710	0.59	+0.5
1,676,698	+		LRK54_RS07710	0.59	+0.7
1,676,698	+		LRK54_RS07710	0.59	+0.1
1,676,698	+		LRK54_RS07710	0.59	-0.0
1,676,699	-		LRK54_RS07710	0.59	-0.1
1,676,699	-		LRK54_RS07710	0.59	+1.5
1,676,699	-		LRK54_RS07710	0.59	-0.1
1,676,699	-		LRK54_RS07710	0.59	+1.0
1,676,699	-		LRK54_RS07710	0.59	-0.4
1,676,699	-		LRK54_RS07710	0.59	+0.8
1,676,699	-		LRK54_RS07710	0.59	-1.8
1,676,699	-		LRK54_RS07710	0.59	+0.8
1,676,699	-		LRK54_RS07710	0.59	-0.0
1,676,699	-		LRK54_RS07710	0.59	-0.6
1,676,740	+		LRK54_RS07710	0.62	-0.5
1,676,740	+		LRK54_RS07710	0.62	+0.4
1,676,740	+		LRK54_RS07710	0.62	-1.1
1,676,740	+		LRK54_RS07710	0.62	-0.2
1,676,740	+		LRK54_RS07710	0.62	+0.5
1,676,740	+		LRK54_RS07710	0.62	+0.2
1,676,740	+		LRK54_RS07710	0.62	+0.3
1,676,740	+		LRK54_RS07710	0.62	+0.2
1,676,740	+		LRK54_RS07710	0.62	-0.1
1,676,740	+		LRK54_RS07710	0.62	-1.1
1,676,740	+		LRK54_RS07710	0.62	-0.2
1,676,741	-		LRK54_RS07710	0.63	+0.3
1,676,741	-		LRK54_RS07710	0.63	+1.1
1,676,741	-		LRK54_RS07710	0.63	-0.0
1,676,741	-		LRK54_RS07710	0.63	-1.2
1,676,741	-		LRK54_RS07710	0.63	+0.2
1,676,741	-		LRK54_RS07710	0.63	-0.5
1,676,741	-		LRK54_RS07710	0.63	-1.3
1,676,741	-		LRK54_RS07710	0.63	-0.7
1,676,741	-		LRK54_RS07710	0.63	+0.9
1,676,741	-		LRK54_RS07710	0.63	-0.5
1,676,741	-		LRK54_RS07710	0.63	-2.0
1,676,741	-		LRK54_RS07710	0.63	+0.9
1,676,819	-		LRK54_RS07710	0.69	+0.0
1,676,819	-		LRK54_RS07710	0.69	+0.9
1,676,819	-		LRK54_RS07710	0.69	-0.2
1,676,866	+		LRK54_RS07710	0.72	+1.0
1,676,866	+		LRK54_RS07710	0.72	-1.4
1,676,867	-		LRK54_RS07710	0.72	+1.9
1,676,867	-		LRK54_RS07710	0.72	+0.3
1,676,914	+		LRK54_RS07710	0.76	-1.5
1,676,914	+		LRK54_RS07710	0.76	-0.3
1,676,929	+		LRK54_RS07710	0.77	+0.3
1,676,930	-		LRK54_RS07710	0.77	+1.0
1,676,930	-		LRK54_RS07710	0.77	-1.0
1,677,151	+				+0.3
1,677,151	+				+1.1
1,677,151	+				-2.0
1,677,151	+				+1.1
1,677,151	+				-0.2
1,677,151	+				-0.5
1,677,152	-				+1.5
1,677,152	-				-2.0
1,677,152	-				+0.5
1,677,152	-				-1.5
1,677,157	+				+0.9
1,677,157	+				-0.7
1,677,157	+				-0.7
1,677,157	+				+1.6
1,677,157	+				-0.4
1,677,157	+				-0.1
1,677,157	+				-0.6
1,677,157	+				-0.2
1,677,157	+				+2.3
1,677,157	+				+0.9
1,677,157	+				-0.9
1,677,157	+				+1.6
1,677,157	+				-0.1
1,677,157	+				-0.5
1,677,157	+				-1.1
1,677,157	+				-1.0
1,677,157	+				-1.1
1,677,157	+				-0.4
1,677,157	+				+1.5
1,677,157	+				+0.4
1,677,157	+				-0.5
1,677,157	+				+1.0
1,677,157	+				+0.1
1,677,158	-				-0.1
1,677,158	-				+0.6
1,677,158	-				+0.4
1,677,158	-				-1.7
1,677,158	-				+0.7
1,677,158	-				+0.9
1,677,158	-				-1.5
1,677,158	-				+0.4
1,677,158	-				+1.2
1,677,158	-				+0.0
1,677,158	-				+0.6
1,677,158	-				+0.3
1,677,158	-				+1.2
1,677,158	-				+0.5
1,677,158	-				+3.2
1,677,166	+				-0.6
1,677,166	+				-1.8
1,677,166	+				+0.3
1,677,166	+				-0.3
1,677,167	-				-2.5
1,677,167	-				-0.5
1,677,167	-				+0.0
1,677,167	-				+0.7
1,677,169	+				-0.2
1,677,169	+				-0.5
1,677,169	+				+1.1
1,677,169	+				-1.3
1,677,169	+				+0.0
1,677,169	+				+1.1
1,677,170	-				-0.1
1,677,170	-				+0.3
1,677,170	-				+0.6
1,677,170	-				-2.3
1,677,170	-				+1.0
1,677,226	+				-1.0
1,677,226	+				+0.1
1,677,226	+				+0.1
1,677,226	+				-0.1
1,677,227	-				+0.3
1,677,227	-				-0.3
1,677,227	-				+0.7
1,677,227	-				-0.7
1,677,231	+				+0.0
1,677,231	+				-0.8
1,677,231	+				-0.7
1,677,231	+				+1.4
1,677,232	-				-1.1
1,677,232	-				-0.5
1,677,232	-				-0.3
1,677,232	-				-2.4
1,677,232	-				-1.7
1,677,232	-				-0.4
1,677,232	-				+0.3
1,677,307	+				+0.0
1,677,307	+				-1.4
1,677,308	-				-0.3
1,677,308	-				+1.9
1,677,308	-				+0.4
1,677,308	-				+0.6
1,677,308	-				+0.9
1,677,525	+		LRK54_RS07715	0.19	+1.6
1,677,525	+		LRK54_RS07715	0.19	-0.4
1,677,525	+		LRK54_RS07715	0.19	-1.5
1,677,526	-		LRK54_RS07715	0.19	+0.9
1,677,526	-		LRK54_RS07715	0.19	-1.3
1,677,546	+		LRK54_RS07715	0.21	-2.1
1,677,546	+		LRK54_RS07715	0.21	-1.3
1,677,546	+		LRK54_RS07715	0.21	+0.8
1,677,546	+		LRK54_RS07715	0.21	-1.4
1,677,546	+		LRK54_RS07715	0.21	-1.4
1,677,546	+		LRK54_RS07715	0.21	-0.6
1,677,546	+		LRK54_RS07715	0.21	-1.6
1,677,546	+		LRK54_RS07715	0.21	-0.1
1,677,546	+		LRK54_RS07715	0.21	-0.1
1,677,546	+		LRK54_RS07715	0.21	-0.0
1,677,546	+		LRK54_RS07715	0.21	-1.8
1,677,546	+		LRK54_RS07715	0.21	+0.3
1,677,546	+		LRK54_RS07715	0.21	+0.2
1,677,546	+		LRK54_RS07715	0.21	+0.9
1,677,546	+		LRK54_RS07715	0.21	-0.7
1,677,546	+		LRK54_RS07715	0.21	+0.2
1,677,547	-		LRK54_RS07715	0.21	-0.8
1,677,547	-		LRK54_RS07715	0.21	-1.1
1,677,547	-		LRK54_RS07715	0.21	-0.5
1,677,547	-		LRK54_RS07715	0.21	-2.1
1,677,547	-		LRK54_RS07715	0.21	-0.5
1,677,547	-		LRK54_RS07715	0.21	-1.0
1,677,547	-		LRK54_RS07715	0.21	+0.4
1,677,547	-		LRK54_RS07715	0.21	-2.1
1,677,547	-		LRK54_RS07715	0.21	-1.3
1,677,547	-		LRK54_RS07715	0.21	-0.8
1,677,547	-		LRK54_RS07715	0.21	-2.2
1,677,547	-		LRK54_RS07715	0.21	+0.9
1,677,547	-		LRK54_RS07715	0.21	-1.0
1,677,547	-		LRK54_RS07715	0.21	-1.5
1,677,547	-		LRK54_RS07715	0.21	-0.5
1,677,547	-		LRK54_RS07715	0.21	+0.3
1,677,547	-		LRK54_RS07715	0.21	-0.7
1,677,547	-		LRK54_RS07715	0.21	+0.5
1,677,547	-		LRK54_RS07715	0.21	+0.3
1,677,547	-		LRK54_RS07715	0.21	-3.8
1,677,810	+		LRK54_RS07715	0.45	-0.6
1,677,810	+		LRK54_RS07715	0.45	+0.1
1,677,810	+		LRK54_RS07715	0.45	+1.2
1,677,811	-		LRK54_RS07715	0.45	+0.1
1,677,811	-		LRK54_RS07715	0.45	+0.3
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1,677,811	-		LRK54_RS07715	0.45	-2.8
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1,677,811	-		LRK54_RS07715	0.45	-0.1
1,677,835	-		LRK54_RS07715	0.48	-2.1
1,677,835	-		LRK54_RS07715	0.48	-1.3
1,677,924	+		LRK54_RS07715	0.56	-1.1
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1,677,933	+		LRK54_RS07715	0.57	-1.3
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1,677,954	+		LRK54_RS07715	0.59	+0.9
1,677,954	+		LRK54_RS07715	0.59	-0.1
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1,677,955	-		LRK54_RS07715	0.59	+0.3
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1,677,996	+		LRK54_RS07715	0.63	-1.7
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1,677,997	-		LRK54_RS07715	0.63	+0.0
1,677,997	-		LRK54_RS07715	0.63	+0.3
1,677,997	-		LRK54_RS07715	0.63	-0.5
1,678,135	-		LRK54_RS07715	0.76	+0.6
1,678,135	-		LRK54_RS07715	0.76	-0.0
1,678,135	-		LRK54_RS07715	0.76	+1.2