Experiment: R2A with silver chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS02540 and LRK54_RS02545 are separated by 14 nucleotides LRK54_RS02545 and LRK54_RS02550 are separated by 282 nucleotides LRK54_RS02550 and LRK54_RS02555 are separated by 151 nucleotides
LRK54_RS02540: LRK54_RS02540 - 30S ribosomal protein S18, at 549,821 to 550,051
_RS02540
LRK54_RS02545: LRK54_RS02545 - 30S ribosomal protein S6, at 550,066 to 550,488
_RS02545
LRK54_RS02550: LRK54_RS02550 - iron-sulfur cluster assembly accessory protein, at 550,771 to 551,097
_RS02550
LRK54_RS02555: LRK54_RS02555 - asparagine--tRNA ligase, at 551,249 to 552,664
_RS02555
Position (kb) 550
551
552 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 549.790 kb on + strand at 549.790 kb on + strand at 549.804 kb on + strand at 549.804 kb on + strand at 549.804 kb on + strand at 549.844 kb on - strand, within LRK54_RS02540 at 550.600 kb on - strand at 550.600 kb on - strand at 550.643 kb on + strand at 550.643 kb on + strand at 550.643 kb on + strand at 550.643 kb on + strand at 550.644 kb on - strand at 550.644 kb on - strand at 550.644 kb on - strand at 550.644 kb on - strand at 550.644 kb on - strand at 550.760 kb on + strand at 550.760 kb on + strand at 550.760 kb on + strand at 550.760 kb on + strand at 550.760 kb on + strand at 550.760 kb on + strand at 550.760 kb on + strand at 550.760 kb on + strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.979 kb on + strand, within LRK54_RS02550 at 550.979 kb on + strand, within LRK54_RS02550 at 550.979 kb on + strand, within LRK54_RS02550 at 550.979 kb on + strand, within LRK54_RS02550 at 550.979 kb on + strand, within LRK54_RS02550 at 550.980 kb on - strand, within LRK54_RS02550 at 550.980 kb on - strand, within LRK54_RS02550 at 550.980 kb on - strand, within LRK54_RS02550 at 550.980 kb on - strand, within LRK54_RS02550 at 550.980 kb on - strand, within LRK54_RS02550 at 550.980 kb on - strand, within LRK54_RS02550 at 550.980 kb on - strand, within LRK54_RS02550 at 550.980 kb on - strand, within LRK54_RS02550 at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.271 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with silver chloride 1 mM remove 549,790 + -0.0 549,790 + -0.3 549,804 + -2.8 549,804 + -0.0 549,804 + +0.4 549,844 - LRK54_RS02540 0.10 -1.8 550,600 - -0.0 550,600 - +1.0 550,643 + +0.0 550,643 + +2.8 550,643 + +0.4 550,643 + -1.7 550,644 - +0.3 550,644 - -0.2 550,644 - -1.1 550,644 - -0.3 550,644 - +2.0 550,760 + -0.1 550,760 + -0.6 550,760 + +1.2 550,760 + -0.1 550,760 + -1.3 550,760 + -1.3 550,760 + -0.9 550,760 + -0.6 550,761 - -0.2 550,761 - +0.1 550,761 - -1.2 550,761 - +1.1 550,761 - -1.7 550,761 - +0.6 550,761 - -0.6 550,761 - +0.0 550,761 - -0.3 550,761 - -0.0 550,761 - -0.0 550,761 - +0.1 550,761 - -0.8 550,761 - -0.6 550,761 - +0.7 550,761 - +1.3 550,761 - +1.1 550,979 + LRK54_RS02550 0.64 -2.2 550,979 + LRK54_RS02550 0.64 +0.4 550,979 + LRK54_RS02550 0.64 -1.7 550,979 + LRK54_RS02550 0.64 -0.6 550,979 + LRK54_RS02550 0.64 -1.8 550,980 - LRK54_RS02550 0.64 -0.0 550,980 - LRK54_RS02550 0.64 -1.9 550,980 - LRK54_RS02550 0.64 +1.0 550,980 - LRK54_RS02550 0.64 -0.0 550,980 - LRK54_RS02550 0.64 -1.5 550,980 - LRK54_RS02550 0.64 -1.7 550,980 - LRK54_RS02550 0.64 -0.7 550,980 - LRK54_RS02550 0.64 -1.2 551,154 + -0.5 551,154 + -0.6 551,154 + +4.3 551,154 + +0.2 551,154 + +1.4 551,154 + -0.0 551,154 + -1.0 551,154 + -0.9 551,154 + -1.8 551,154 + -1.9 551,154 + -1.3 551,154 + -1.2 551,154 + +0.4 551,154 + +2.0 551,154 + -1.2 551,154 + +2.3 551,154 + -0.8 551,154 + +0.4 551,154 + -0.8 551,154 + +0.2 551,154 + -0.0 551,154 + -0.3 551,154 + -0.2 551,154 + +0.7 551,154 + -1.8 551,154 + -1.1 551,154 + +1.0 551,154 + -0.0 551,155 - -1.6 551,155 - +0.8 551,155 - +1.0 551,155 - +1.6 551,155 - -0.5 551,155 - -0.2 551,155 - +1.0 551,155 - -0.0 551,155 - -0.2 551,155 - +1.3 551,155 - -0.1 551,155 - +0.4 551,155 - +0.4 551,155 - +0.6 551,155 - +1.6 551,155 - +1.5 551,155 - +0.1 551,155 - -1.3 551,155 - -0.0 551,155 - +1.8 551,155 - -0.5 551,155 - +0.4 551,155 - +0.1 551,155 - +0.5 551,155 - -0.1 551,155 - -2.3 551,159 + +1.0 551,159 + -1.1 551,159 + -0.8 551,159 + +1.0 551,159 + -0.3 551,159 + -1.7 551,159 + -0.8 551,159 + +1.4 551,159 + -0.3 551,159 + +0.4 551,159 + +1.0 551,159 + -0.6 551,159 + -1.0 551,159 + -0.6 551,159 + +0.6 551,159 + +1.4 551,159 + +0.2 551,159 + -0.3 551,159 + -1.0 551,160 - -0.5 551,160 - -0.8 551,160 - +0.4 551,160 - -0.0 551,160 - +1.7 551,160 - -1.7 551,160 - -0.6 551,160 - +1.3 551,160 - -2.6 551,160 - +0.4 551,160 - -1.6 551,160 - +0.1 551,160 - +3.0 551,160 - -1.1 551,160 - +0.4 551,160 - +3.0 551,160 - +0.2 551,160 - +0.1 551,160 - -0.5 551,160 - -0.5 551,160 - -1.2 551,160 - +0.2 551,160 - +1.0 551,160 - +1.0 551,160 - +1.8 551,160 - -0.9 551,160 - +0.4 551,160 - +1.0 551,160 - -0.8 551,160 - -0.1 551,160 - +2.6 551,271 + -1.2
Or see this region's nucleotide sequence