Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS01820

Experiment: R2A with silver chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS01810 and LRK54_RS01815 are separated by 156 nucleotidesLRK54_RS01815 and LRK54_RS01820 are separated by 71 nucleotidesLRK54_RS01820 and LRK54_RS01825 overlap by 8 nucleotidesLRK54_RS01825 and LRK54_RS01830 overlap by 4 nucleotides LRK54_RS01810: LRK54_RS01810 - iron-sulfur cluster carrier protein ApbC, at 382,495 to 383,589 _RS01810 LRK54_RS01815: LRK54_RS01815 - DUF2147 domain-containing protein, at 383,746 to 384,210 _RS01815 LRK54_RS01820: LRK54_RS01820 - DeoR/GlpR family DNA-binding transcription regulator, at 384,282 to 385,079 _RS01820 LRK54_RS01825: LRK54_RS01825 - HAD family phosphatase, at 385,072 to 385,701 _RS01825 LRK54_RS01830: LRK54_RS01830 - MFS transporter, at 385,698 to 386,861 _RS01830 Position (kb) 384 385 386Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 383.621 kb on - strandat 383.621 kb on - strandat 383.621 kb on - strandat 383.621 kb on - strandat 383.621 kb on - strandat 383.621 kb on - strandat 383.621 kb on - strandat 383.621 kb on - strandat 383.621 kb on - strandat 383.720 kb on + strandat 383.720 kb on + strandat 383.720 kb on + strandat 383.720 kb on + strandat 383.720 kb on + strandat 383.905 kb on + strand, within LRK54_RS01815at 383.905 kb on + strand, within LRK54_RS01815at 383.906 kb on - strand, within LRK54_RS01815at 383.906 kb on - strand, within LRK54_RS01815at 383.906 kb on - strand, within LRK54_RS01815at 384.103 kb on + strand, within LRK54_RS01815at 384.103 kb on + strand, within LRK54_RS01815at 384.103 kb on + strand, within LRK54_RS01815at 384.103 kb on + strand, within LRK54_RS01815at 384.103 kb on + strand, within LRK54_RS01815at 384.103 kb on + strand, within LRK54_RS01815at 384.103 kb on + strand, within LRK54_RS01815at 384.103 kb on + strand, within LRK54_RS01815at 384.103 kb on + strand, within LRK54_RS01815at 384.103 kb on + strand, within LRK54_RS01815at 384.103 kb on + strand, within LRK54_RS01815at 384.103 kb on + strand, within LRK54_RS01815at 384.104 kb on - strand, within LRK54_RS01815at 384.104 kb on - strand, within LRK54_RS01815at 384.104 kb on - strand, within LRK54_RS01815at 384.104 kb on - strand, within LRK54_RS01815at 384.104 kb on - strand, within LRK54_RS01815at 384.104 kb on - strand, within LRK54_RS01815at 384.104 kb on - strand, within LRK54_RS01815at 384.104 kb on - strand, within LRK54_RS01815at 384.104 kb on - strand, within LRK54_RS01815at 384.157 kb on + strand, within LRK54_RS01815at 384.157 kb on + strand, within LRK54_RS01815at 384.157 kb on + strand, within LRK54_RS01815at 384.157 kb on + strand, within LRK54_RS01815at 384.157 kb on + strand, within LRK54_RS01815at 384.157 kb on + strand, within LRK54_RS01815at 384.158 kb on - strand, within LRK54_RS01815at 384.158 kb on - strand, within LRK54_RS01815at 384.158 kb on - strand, within LRK54_RS01815at 384.158 kb on - strand, within LRK54_RS01815at 384.158 kb on - strand, within LRK54_RS01815at 384.158 kb on - strand, within LRK54_RS01815at 384.376 kb on + strand, within LRK54_RS01820at 384.376 kb on + strand, within LRK54_RS01820at 384.376 kb on + strand, within LRK54_RS01820at 384.376 kb on + strand, within LRK54_RS01820at 384.376 kb on + strand, within LRK54_RS01820at 384.376 kb on + strand, within LRK54_RS01820at 384.376 kb on + strand, within LRK54_RS01820at 384.376 kb on + strand, within LRK54_RS01820at 384.376 kb on + strand, within LRK54_RS01820at 384.376 kb on + strand, within LRK54_RS01820at 384.377 kb on - strand, within LRK54_RS01820at 384.377 kb on - strand, within LRK54_RS01820at 384.377 kb on - strand, within LRK54_RS01820at 384.377 kb on - strand, within LRK54_RS01820at 384.377 kb on - strand, within LRK54_RS01820at 384.377 kb on - strand, within LRK54_RS01820at 384.377 kb on - strand, within LRK54_RS01820at 384.377 kb on - strand, within LRK54_RS01820at 384.377 kb on - strand, within LRK54_RS01820at 384.377 kb on - strand, within LRK54_RS01820at 384.377 kb on - strand, within LRK54_RS01820at 384.377 kb on - strand, within LRK54_RS01820at 384.377 kb on - strand, within LRK54_RS01820at 384.377 kb on - strand, within LRK54_RS01820at 384.895 kb on + strand, within LRK54_RS01820at 384.895 kb on + strand, within LRK54_RS01820at 384.895 kb on + strand, within LRK54_RS01820at 384.895 kb on + strand, within LRK54_RS01820at 384.895 kb on + strand, within LRK54_RS01820at 384.896 kb on - strand, within LRK54_RS01820at 384.966 kb on + strand, within LRK54_RS01820at 384.966 kb on + strand, within LRK54_RS01820at 384.967 kb on - strand, within LRK54_RS01820at 385.073 kb on + strandat 385.073 kb on + strandat 385.073 kb on + strandat 385.073 kb on + strandat 385.073 kb on + strandat 385.074 kb on - strandat 385.074 kb on - strandat 385.074 kb on - strandat 385.074 kb on - strandat 385.202 kb on + strand, within LRK54_RS01825at 385.202 kb on + strand, within LRK54_RS01825at 385.202 kb on + strand, within LRK54_RS01825at 385.202 kb on + strand, within LRK54_RS01825at 385.202 kb on + strand, within LRK54_RS01825at 385.202 kb on + strand, within LRK54_RS01825at 385.202 kb on + strand, within LRK54_RS01825at 385.202 kb on + strand, within LRK54_RS01825at 385.202 kb on + strand, within LRK54_RS01825at 385.202 kb on + strand, within LRK54_RS01825at 385.202 kb on + strand, within LRK54_RS01825at 385.202 kb on + strand, within LRK54_RS01825at 385.202 kb on + strand, within LRK54_RS01825at 385.202 kb on + strand, within LRK54_RS01825at 385.203 kb on - strand, within LRK54_RS01825at 385.203 kb on - strand, within LRK54_RS01825at 385.203 kb on - strand, within LRK54_RS01825at 385.203 kb on - strand, within LRK54_RS01825at 385.203 kb on - strand, within LRK54_RS01825at 385.203 kb on - strand, within LRK54_RS01825at 385.203 kb on - strand, within LRK54_RS01825at 385.203 kb on - strand, within LRK54_RS01825at 385.203 kb on - strand, within LRK54_RS01825at 385.203 kb on - strand, within LRK54_RS01825at 385.203 kb on - strand, within LRK54_RS01825at 385.203 kb on - strand, within LRK54_RS01825at 385.203 kb on - strand, within LRK54_RS01825at 385.203 kb on - strand, within LRK54_RS01825at 385.203 kb on - strand, within LRK54_RS01825at 385.203 kb on - strand, within LRK54_RS01825at 385.203 kb on - strand, within LRK54_RS01825at 385.203 kb on - strand, within LRK54_RS01825at 385.203 kb on - strand, within LRK54_RS01825at 385.203 kb on - strand, within LRK54_RS01825at 385.325 kb on + strand, within LRK54_RS01825at 385.326 kb on - strand, within LRK54_RS01825at 385.376 kb on + strand, within LRK54_RS01825at 385.376 kb on + strand, within LRK54_RS01825at 385.377 kb on - strand, within LRK54_RS01825at 385.377 kb on - strand, within LRK54_RS01825at 385.625 kb on + strand, within LRK54_RS01825at 385.625 kb on + strand, within LRK54_RS01825at 385.626 kb on - strand, within LRK54_RS01825at 385.626 kb on - strand, within LRK54_RS01825at 385.828 kb on + strand, within LRK54_RS01830at 385.829 kb on - strand, within LRK54_RS01830at 385.913 kb on + strand, within LRK54_RS01830at 385.913 kb on + strand, within LRK54_RS01830at 385.913 kb on + strand, within LRK54_RS01830

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with silver chloride 1 mM
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383,621 - -0.6
383,621 - -0.8
383,621 - -1.4
383,621 - -0.8
383,621 - +2.0
383,621 - -0.6
383,621 - -1.3
383,621 - +0.2
383,621 - -1.0
383,720 + -0.4
383,720 + -1.2
383,720 + -1.8
383,720 + +0.6
383,720 + -0.4
383,905 + LRK54_RS01815 0.34 +1.0
383,905 + LRK54_RS01815 0.34 +1.2
383,906 - LRK54_RS01815 0.34 +0.3
383,906 - LRK54_RS01815 0.34 +0.8
383,906 - LRK54_RS01815 0.34 -1.4
384,103 + LRK54_RS01815 0.77 +1.0
384,103 + LRK54_RS01815 0.77 +1.2
384,103 + LRK54_RS01815 0.77 +0.9
384,103 + LRK54_RS01815 0.77 +1.2
384,103 + LRK54_RS01815 0.77 -0.7
384,103 + LRK54_RS01815 0.77 +0.0
384,103 + LRK54_RS01815 0.77 +2.5
384,103 + LRK54_RS01815 0.77 -1.5
384,103 + LRK54_RS01815 0.77 +0.2
384,103 + LRK54_RS01815 0.77 -0.5
384,103 + LRK54_RS01815 0.77 -0.8
384,103 + LRK54_RS01815 0.77 +0.4
384,104 - LRK54_RS01815 0.77 -0.8
384,104 - LRK54_RS01815 0.77 -0.9
384,104 - LRK54_RS01815 0.77 +0.8
384,104 - LRK54_RS01815 0.77 +1.6
384,104 - LRK54_RS01815 0.77 +0.5
384,104 - LRK54_RS01815 0.77 +0.1
384,104 - LRK54_RS01815 0.77 +0.5
384,104 - LRK54_RS01815 0.77 +0.3
384,104 - LRK54_RS01815 0.77 -2.6
384,157 + LRK54_RS01815 0.88 -1.5
384,157 + LRK54_RS01815 0.88 +1.6
384,157 + LRK54_RS01815 0.88 -0.6
384,157 + LRK54_RS01815 0.88 +0.1
384,157 + LRK54_RS01815 0.88 -1.0
384,157 + LRK54_RS01815 0.88 -0.9
384,158 - LRK54_RS01815 0.89 +0.3
384,158 - LRK54_RS01815 0.89 -1.4
384,158 - LRK54_RS01815 0.89 -1.4
384,158 - LRK54_RS01815 0.89 -0.6
384,158 - LRK54_RS01815 0.89 +1.2
384,158 - LRK54_RS01815 0.89 -1.1
384,376 + LRK54_RS01820 0.12 -1.2
384,376 + LRK54_RS01820 0.12 +0.4
384,376 + LRK54_RS01820 0.12 +0.0
384,376 + LRK54_RS01820 0.12 +0.2
384,376 + LRK54_RS01820 0.12 -0.3
384,376 + LRK54_RS01820 0.12 +0.3
384,376 + LRK54_RS01820 0.12 +1.5
384,376 + LRK54_RS01820 0.12 -0.2
384,376 + LRK54_RS01820 0.12 +2.0
384,376 + LRK54_RS01820 0.12 +2.4
384,377 - LRK54_RS01820 0.12 +0.1
384,377 - LRK54_RS01820 0.12 +0.9
384,377 - LRK54_RS01820 0.12 +0.1
384,377 - LRK54_RS01820 0.12 +0.4
384,377 - LRK54_RS01820 0.12 +0.8
384,377 - LRK54_RS01820 0.12 +2.0
384,377 - LRK54_RS01820 0.12 +0.3
384,377 - LRK54_RS01820 0.12 +0.6
384,377 - LRK54_RS01820 0.12 -0.0
384,377 - LRK54_RS01820 0.12 -1.2
384,377 - LRK54_RS01820 0.12 +1.4
384,377 - LRK54_RS01820 0.12 -0.5
384,377 - LRK54_RS01820 0.12 +1.2
384,377 - LRK54_RS01820 0.12 +0.2
384,895 + LRK54_RS01820 0.77 -0.1
384,895 + LRK54_RS01820 0.77 +1.0
384,895 + LRK54_RS01820 0.77 -0.0
384,895 + LRK54_RS01820 0.77 +0.4
384,895 + LRK54_RS01820 0.77 -0.5
384,896 - LRK54_RS01820 0.77 +0.2
384,966 + LRK54_RS01820 0.86 -2.5
384,966 + LRK54_RS01820 0.86 -2.0
384,967 - LRK54_RS01820 0.86 +0.3
385,073 + +1.0
385,073 + -1.5
385,073 + +0.2
385,073 + +0.3
385,073 + -0.8
385,074 - +0.4
385,074 - +0.3
385,074 - +0.1
385,074 - -0.6
385,202 + LRK54_RS01825 0.21 +0.5
385,202 + LRK54_RS01825 0.21 -1.8
385,202 + LRK54_RS01825 0.21 -0.3
385,202 + LRK54_RS01825 0.21 -2.4
385,202 + LRK54_RS01825 0.21 -2.4
385,202 + LRK54_RS01825 0.21 -1.1
385,202 + LRK54_RS01825 0.21 +1.0
385,202 + LRK54_RS01825 0.21 -1.9
385,202 + LRK54_RS01825 0.21 +1.4
385,202 + LRK54_RS01825 0.21 -2.8
385,202 + LRK54_RS01825 0.21 -1.0
385,202 + LRK54_RS01825 0.21 -1.6
385,202 + LRK54_RS01825 0.21 -1.6
385,202 + LRK54_RS01825 0.21 -0.6
385,203 - LRK54_RS01825 0.21 +1.0
385,203 - LRK54_RS01825 0.21 -0.9
385,203 - LRK54_RS01825 0.21 -0.5
385,203 - LRK54_RS01825 0.21 +3.5
385,203 - LRK54_RS01825 0.21 -1.2
385,203 - LRK54_RS01825 0.21 +1.3
385,203 - LRK54_RS01825 0.21 +0.3
385,203 - LRK54_RS01825 0.21 +1.0
385,203 - LRK54_RS01825 0.21 +1.6
385,203 - LRK54_RS01825 0.21 -0.0
385,203 - LRK54_RS01825 0.21 +1.0
385,203 - LRK54_RS01825 0.21 +0.2
385,203 - LRK54_RS01825 0.21 +2.0
385,203 - LRK54_RS01825 0.21 -0.8
385,203 - LRK54_RS01825 0.21 -0.0
385,203 - LRK54_RS01825 0.21 -0.4
385,203 - LRK54_RS01825 0.21 +0.5
385,203 - LRK54_RS01825 0.21 -0.4
385,203 - LRK54_RS01825 0.21 -0.6
385,203 - LRK54_RS01825 0.21 -1.5
385,325 + LRK54_RS01825 0.40 -0.5
385,326 - LRK54_RS01825 0.40 -0.1
385,376 + LRK54_RS01825 0.48 -0.3
385,376 + LRK54_RS01825 0.48 +1.0
385,377 - LRK54_RS01825 0.48 -1.0
385,377 - LRK54_RS01825 0.48 -0.3
385,625 + LRK54_RS01825 0.88 +0.3
385,625 + LRK54_RS01825 0.88 +0.8
385,626 - LRK54_RS01825 0.88 +1.8
385,626 - LRK54_RS01825 0.88 +2.2
385,828 + LRK54_RS01830 0.11 -0.2
385,829 - LRK54_RS01830 0.11 -1.0
385,913 + LRK54_RS01830 0.18 -0.1
385,913 + LRK54_RS01830 0.18 -0.6
385,913 + LRK54_RS01830 0.18 -1.4

Or see this region's nucleotide sequence