Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3483

Experiment: Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3481 and Ga0059261_3482 are separated by 81 nucleotidesGa0059261_3482 and Ga0059261_3483 overlap by 4 nucleotidesGa0059261_3483 and Ga0059261_3484 are separated by 28 nucleotidesGa0059261_3484 and Ga0059261_3485 are separated by 47 nucleotidesGa0059261_3485 and Ga0059261_3486 overlap by 4 nucleotides Ga0059261_3481: Ga0059261_3481 - Beta-glucosidase-related glycosidases, at 3,608,255 to 3,609,256 _3481 Ga0059261_3482: Ga0059261_3482 - condensin subunit ScpA, at 3,609,338 to 3,610,072 _3482 Ga0059261_3483: Ga0059261_3483 - segregation and condensation protein B, at 3,610,069 to 3,610,662 _3483 Ga0059261_3484: Ga0059261_3484 - twin arginine-targeting protein translocase, TatA/E family, at 3,610,691 to 3,610,939 _3484 Ga0059261_3485: Ga0059261_3485 - twin arginine-targeting protein translocase TatB, at 3,610,987 to 3,611,421 _3485 Ga0059261_3486: Ga0059261_3486 - Twin arginine targeting (Tat) protein translocase TatC, at 3,611,418 to 3,612,209 _3486 Position (kb) 3610 3611Strain fitness (log2 ratio) -2 -1 0 1at 3609.470 kb on + strand, within Ga0059261_3482at 3609.470 kb on + strand, within Ga0059261_3482at 3609.470 kb on + strand, within Ga0059261_3482at 3609.470 kb on + strand, within Ga0059261_3482at 3609.471 kb on - strand, within Ga0059261_3482at 3609.479 kb on + strand, within Ga0059261_3482at 3609.479 kb on + strand, within Ga0059261_3482at 3609.479 kb on + strand, within Ga0059261_3482at 3609.479 kb on + strand, within Ga0059261_3482at 3609.479 kb on + strand, within Ga0059261_3482at 3609.479 kb on + strand, within Ga0059261_3482at 3609.480 kb on - strand, within Ga0059261_3482at 3609.480 kb on - strand, within Ga0059261_3482at 3609.480 kb on - strand, within Ga0059261_3482at 3609.480 kb on - strand, within Ga0059261_3482at 3609.480 kb on - strand, within Ga0059261_3482at 3609.480 kb on - strand, within Ga0059261_3482at 3609.480 kb on - strand, within Ga0059261_3482at 3609.480 kb on - strand, within Ga0059261_3482at 3609.480 kb on - strand, within Ga0059261_3482at 3609.480 kb on - strand, within Ga0059261_3482at 3609.524 kb on + strand, within Ga0059261_3482at 3609.524 kb on + strand, within Ga0059261_3482at 3609.551 kb on + strand, within Ga0059261_3482at 3609.551 kb on + strand, within Ga0059261_3482at 3609.552 kb on - strand, within Ga0059261_3482at 3609.770 kb on + strand, within Ga0059261_3482at 3609.770 kb on + strand, within Ga0059261_3482at 3609.770 kb on + strand, within Ga0059261_3482at 3609.770 kb on + strand, within Ga0059261_3482at 3609.770 kb on + strand, within Ga0059261_3482at 3609.771 kb on - strand, within Ga0059261_3482at 3609.771 kb on - strand, within Ga0059261_3482at 3609.771 kb on - strand, within Ga0059261_3482at 3609.788 kb on + strand, within Ga0059261_3482at 3609.789 kb on - strand, within Ga0059261_3482at 3609.789 kb on - strand, within Ga0059261_3482at 3609.950 kb on + strand, within Ga0059261_3482at 3610.049 kb on + strandat 3610.049 kb on + strandat 3610.049 kb on + strandat 3610.050 kb on - strandat 3610.050 kb on - strandat 3610.050 kb on - strandat 3610.050 kb on - strandat 3610.147 kb on - strand, within Ga0059261_3483at 3610.156 kb on + strand, within Ga0059261_3483at 3610.157 kb on - strand, within Ga0059261_3483at 3610.157 kb on - strand, within Ga0059261_3483at 3610.157 kb on - strand, within Ga0059261_3483at 3610.157 kb on - strand, within Ga0059261_3483at 3610.157 kb on - strand, within Ga0059261_3483at 3610.157 kb on - strand, within Ga0059261_3483at 3610.210 kb on + strand, within Ga0059261_3483at 3610.210 kb on + strand, within Ga0059261_3483at 3610.211 kb on - strand, within Ga0059261_3483at 3610.357 kb on + strand, within Ga0059261_3483at 3610.358 kb on - strand, within Ga0059261_3483at 3610.358 kb on - strand, within Ga0059261_3483at 3610.640 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.005 mg/ml
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3,609,470 + Ga0059261_3482 0.18 +0.7
3,609,470 + Ga0059261_3482 0.18 +0.2
3,609,470 + Ga0059261_3482 0.18 -1.1
3,609,470 + Ga0059261_3482 0.18 -0.2
3,609,471 - Ga0059261_3482 0.18 +0.1
3,609,479 + Ga0059261_3482 0.19 +0.0
3,609,479 + Ga0059261_3482 0.19 -0.4
3,609,479 + Ga0059261_3482 0.19 -0.5
3,609,479 + Ga0059261_3482 0.19 -0.1
3,609,479 + Ga0059261_3482 0.19 +0.5
3,609,479 + Ga0059261_3482 0.19 -1.2
3,609,480 - Ga0059261_3482 0.19 -0.1
3,609,480 - Ga0059261_3482 0.19 +0.2
3,609,480 - Ga0059261_3482 0.19 -0.4
3,609,480 - Ga0059261_3482 0.19 -0.1
3,609,480 - Ga0059261_3482 0.19 -0.2
3,609,480 - Ga0059261_3482 0.19 -2.2
3,609,480 - Ga0059261_3482 0.19 -0.6
3,609,480 - Ga0059261_3482 0.19 +0.1
3,609,480 - Ga0059261_3482 0.19 +0.1
3,609,480 - Ga0059261_3482 0.19 -0.5
3,609,524 + Ga0059261_3482 0.25 -1.1
3,609,524 + Ga0059261_3482 0.25 +0.6
3,609,551 + Ga0059261_3482 0.29 -0.1
3,609,551 + Ga0059261_3482 0.29 -1.0
3,609,552 - Ga0059261_3482 0.29 +0.4
3,609,770 + Ga0059261_3482 0.59 +1.2
3,609,770 + Ga0059261_3482 0.59 +0.0
3,609,770 + Ga0059261_3482 0.59 -0.4
3,609,770 + Ga0059261_3482 0.59 -1.2
3,609,770 + Ga0059261_3482 0.59 -0.2
3,609,771 - Ga0059261_3482 0.59 -0.2
3,609,771 - Ga0059261_3482 0.59 -1.1
3,609,771 - Ga0059261_3482 0.59 +0.4
3,609,788 + Ga0059261_3482 0.61 +0.3
3,609,789 - Ga0059261_3482 0.61 -0.7
3,609,789 - Ga0059261_3482 0.61 +0.8
3,609,950 + Ga0059261_3482 0.83 +0.4
3,610,049 + -0.5
3,610,049 + +0.0
3,610,049 + -0.2
3,610,050 - -0.1
3,610,050 - +0.0
3,610,050 - +0.2
3,610,050 - -0.8
3,610,147 - Ga0059261_3483 0.13 +0.3
3,610,156 + Ga0059261_3483 0.15 +0.9
3,610,157 - Ga0059261_3483 0.15 -0.7
3,610,157 - Ga0059261_3483 0.15 -0.0
3,610,157 - Ga0059261_3483 0.15 +0.4
3,610,157 - Ga0059261_3483 0.15 +0.3
3,610,157 - Ga0059261_3483 0.15 -0.2
3,610,157 - Ga0059261_3483 0.15 -0.1
3,610,210 + Ga0059261_3483 0.24 +0.0
3,610,210 + Ga0059261_3483 0.24 +0.2
3,610,211 - Ga0059261_3483 0.24 +0.1
3,610,357 + Ga0059261_3483 0.48 -1.6
3,610,358 - Ga0059261_3483 0.49 -0.2
3,610,358 - Ga0059261_3483 0.49 -0.5
3,610,640 + -2.3

Or see this region's nucleotide sequence