Experiment: Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_3382 and Ga0059261_3383 are separated by 97 nucleotides Ga0059261_3383 and Ga0059261_3384 are separated by 86 nucleotides Ga0059261_3384 and Ga0059261_3385 are separated by 125 nucleotides Ga0059261_3385 and Ga0059261_3386 are separated by 313 nucleotides
Ga0059261_3382: Ga0059261_3382 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 3,512,775 to 3,513,512
_3382
Ga0059261_3383: Ga0059261_3383 - transcriptional regulator, TetR family, at 3,513,610 to 3,514,236
_3383
Ga0059261_3384: Ga0059261_3384 - glutamine synthetase, type I, at 3,514,323 to 3,515,735
_3384
Ga0059261_3385: Ga0059261_3385 - nitrogen regulatory protein P-II family, at 3,515,861 to 3,516,199
_3385
Ga0059261_3386: Ga0059261_3386 - Uncharacterized protein conserved in bacteria, at 3,516,513 to 3,518,327
_3386
Position (kb)
3514
3515
3516 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3513.406 kb on + strand, within Ga0059261_3382 at 3513.406 kb on + strand, within Ga0059261_3382 at 3513.406 kb on + strand, within Ga0059261_3382 at 3513.406 kb on + strand, within Ga0059261_3382 at 3513.407 kb on - strand, within Ga0059261_3382 at 3513.407 kb on - strand, within Ga0059261_3382 at 3513.407 kb on - strand, within Ga0059261_3382 at 3513.581 kb on - strand at 3513.621 kb on + strand at 3513.621 kb on + strand at 3513.621 kb on + strand at 3513.621 kb on + strand at 3513.622 kb on - strand at 3513.622 kb on - strand at 3513.622 kb on - strand at 3513.706 kb on + strand, within Ga0059261_3383 at 3513.706 kb on + strand, within Ga0059261_3383 at 3513.706 kb on + strand, within Ga0059261_3383 at 3513.706 kb on + strand, within Ga0059261_3383 at 3513.706 kb on + strand, within Ga0059261_3383 at 3513.706 kb on + strand, within Ga0059261_3383 at 3513.706 kb on + strand, within Ga0059261_3383 at 3513.706 kb on + strand, within Ga0059261_3383 at 3513.706 kb on + strand, within Ga0059261_3383 at 3513.706 kb on + strand, within Ga0059261_3383 at 3513.706 kb on + strand, within Ga0059261_3383 at 3513.706 kb on + strand, within Ga0059261_3383 at 3513.707 kb on - strand, within Ga0059261_3383 at 3513.707 kb on - strand, within Ga0059261_3383 at 3513.707 kb on - strand, within Ga0059261_3383 at 3513.707 kb on - strand, within Ga0059261_3383 at 3513.767 kb on - strand, within Ga0059261_3383 at 3513.817 kb on + strand, within Ga0059261_3383 at 3513.818 kb on - strand, within Ga0059261_3383 at 3513.818 kb on - strand, within Ga0059261_3383 at 3513.818 kb on - strand, within Ga0059261_3383 at 3513.830 kb on - strand, within Ga0059261_3383 at 3513.862 kb on - strand, within Ga0059261_3383 at 3513.917 kb on - strand, within Ga0059261_3383 at 3513.917 kb on - strand, within Ga0059261_3383 at 3513.917 kb on - strand, within Ga0059261_3383 at 3513.917 kb on - strand, within Ga0059261_3383 at 3514.237 kb on + strand at 3514.237 kb on + strand at 3515.838 kb on + strand at 3515.839 kb on - strand at 3516.374 kb on - strand at 3516.374 kb on - strand at 3516.401 kb on + strand at 3516.402 kb on - strand at 3516.472 kb on + strand at 3516.507 kb on + strand at 3516.507 kb on + strand at 3516.512 kb on + strand at 3516.512 kb on + strand at 3516.512 kb on + strand at 3516.512 kb on + strand at 3516.512 kb on + strand at 3516.512 kb on + strand at 3516.512 kb on + strand at 3516.512 kb on + strand at 3516.513 kb on - strand at 3516.513 kb on - strand at 3516.513 kb on - strand at 3516.513 kb on - strand at 3516.513 kb on - strand at 3516.513 kb on - strand at 3516.513 kb on - strand at 3516.513 kb on - strand at 3516.513 kb on - strand at 3516.735 kb on + strand, within Ga0059261_3386 at 3516.735 kb on + strand, within Ga0059261_3386 at 3516.735 kb on + strand, within Ga0059261_3386 at 3516.735 kb on + strand, within Ga0059261_3386 at 3516.735 kb on + strand, within Ga0059261_3386 at 3516.735 kb on + strand, within Ga0059261_3386 at 3516.735 kb on + strand, within Ga0059261_3386 at 3516.735 kb on + strand, within Ga0059261_3386 at 3516.735 kb on + strand, within Ga0059261_3386
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.005 mg/ml remove 3,513,406 + Ga0059261_3382 0.86 -0.7 3,513,406 + Ga0059261_3382 0.86 +0.2 3,513,406 + Ga0059261_3382 0.86 +0.6 3,513,406 + Ga0059261_3382 0.86 -0.1 3,513,407 - Ga0059261_3382 0.86 -0.3 3,513,407 - Ga0059261_3382 0.86 -1.3 3,513,407 - Ga0059261_3382 0.86 -1.5 3,513,581 - -0.6 3,513,621 + +1.0 3,513,621 + -0.1 3,513,621 + -0.2 3,513,621 + +0.7 3,513,622 - -0.9 3,513,622 - -0.7 3,513,622 - +1.6 3,513,706 + Ga0059261_3383 0.15 -0.6 3,513,706 + Ga0059261_3383 0.15 -0.3 3,513,706 + Ga0059261_3383 0.15 -0.5 3,513,706 + Ga0059261_3383 0.15 -0.9 3,513,706 + Ga0059261_3383 0.15 -0.1 3,513,706 + Ga0059261_3383 0.15 -0.1 3,513,706 + Ga0059261_3383 0.15 -0.5 3,513,706 + Ga0059261_3383 0.15 -1.3 3,513,706 + Ga0059261_3383 0.15 -0.4 3,513,706 + Ga0059261_3383 0.15 -0.8 3,513,706 + Ga0059261_3383 0.15 -1.0 3,513,706 + Ga0059261_3383 0.15 -1.3 3,513,707 - Ga0059261_3383 0.15 -0.3 3,513,707 - Ga0059261_3383 0.15 -0.7 3,513,707 - Ga0059261_3383 0.15 -0.6 3,513,707 - Ga0059261_3383 0.15 -0.2 3,513,767 - Ga0059261_3383 0.25 -0.5 3,513,817 + Ga0059261_3383 0.33 -2.1 3,513,818 - Ga0059261_3383 0.33 +0.6 3,513,818 - Ga0059261_3383 0.33 -0.4 3,513,818 - Ga0059261_3383 0.33 -0.4 3,513,830 - Ga0059261_3383 0.35 -0.5 3,513,862 - Ga0059261_3383 0.40 -0.5 3,513,917 - Ga0059261_3383 0.49 -0.2 3,513,917 - Ga0059261_3383 0.49 -0.2 3,513,917 - Ga0059261_3383 0.49 +0.3 3,513,917 - Ga0059261_3383 0.49 +0.2 3,514,237 + +0.3 3,514,237 + +0.1 3,515,838 + +0.2 3,515,839 - +0.6 3,516,374 - -0.6 3,516,374 - -0.1 3,516,401 + -0.3 3,516,402 - -1.1 3,516,472 + +0.2 3,516,507 + +0.0 3,516,507 + -0.1 3,516,512 + +0.6 3,516,512 + -0.2 3,516,512 + +0.0 3,516,512 + -0.9 3,516,512 + -0.0 3,516,512 + +0.6 3,516,512 + +0.1 3,516,512 + -0.7 3,516,513 - -0.1 3,516,513 - +0.8 3,516,513 - +0.5 3,516,513 - -0.4 3,516,513 - +0.3 3,516,513 - -0.1 3,516,513 - -0.5 3,516,513 - -0.6 3,516,513 - +0.1 3,516,735 + Ga0059261_3386 0.12 +0.1 3,516,735 + Ga0059261_3386 0.12 +2.1 3,516,735 + Ga0059261_3386 0.12 +0.2 3,516,735 + Ga0059261_3386 0.12 -0.4 3,516,735 + Ga0059261_3386 0.12 +0.3 3,516,735 + Ga0059261_3386 0.12 +0.4 3,516,735 + Ga0059261_3386 0.12 +0.2 3,516,735 + Ga0059261_3386 0.12 -0.1 3,516,735 + Ga0059261_3386 0.12 -0.5
Or see this region's nucleotide sequence