Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3384

Experiment: Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3382 and Ga0059261_3383 are separated by 97 nucleotidesGa0059261_3383 and Ga0059261_3384 are separated by 86 nucleotidesGa0059261_3384 and Ga0059261_3385 are separated by 125 nucleotidesGa0059261_3385 and Ga0059261_3386 are separated by 313 nucleotides Ga0059261_3382: Ga0059261_3382 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 3,512,775 to 3,513,512 _3382 Ga0059261_3383: Ga0059261_3383 - transcriptional regulator, TetR family, at 3,513,610 to 3,514,236 _3383 Ga0059261_3384: Ga0059261_3384 - glutamine synthetase, type I, at 3,514,323 to 3,515,735 _3384 Ga0059261_3385: Ga0059261_3385 - nitrogen regulatory protein P-II family, at 3,515,861 to 3,516,199 _3385 Ga0059261_3386: Ga0059261_3386 - Uncharacterized protein conserved in bacteria, at 3,516,513 to 3,518,327 _3386 Position (kb) 3514 3515 3516Strain fitness (log2 ratio) -2 -1 0 1 2at 3513.406 kb on + strand, within Ga0059261_3382at 3513.406 kb on + strand, within Ga0059261_3382at 3513.406 kb on + strand, within Ga0059261_3382at 3513.406 kb on + strand, within Ga0059261_3382at 3513.407 kb on - strand, within Ga0059261_3382at 3513.407 kb on - strand, within Ga0059261_3382at 3513.407 kb on - strand, within Ga0059261_3382at 3513.581 kb on - strandat 3513.621 kb on + strandat 3513.621 kb on + strandat 3513.621 kb on + strandat 3513.621 kb on + strandat 3513.622 kb on - strandat 3513.622 kb on - strandat 3513.622 kb on - strandat 3513.706 kb on + strand, within Ga0059261_3383at 3513.706 kb on + strand, within Ga0059261_3383at 3513.706 kb on + strand, within Ga0059261_3383at 3513.706 kb on + strand, within Ga0059261_3383at 3513.706 kb on + strand, within Ga0059261_3383at 3513.706 kb on + strand, within Ga0059261_3383at 3513.706 kb on + strand, within Ga0059261_3383at 3513.706 kb on + strand, within Ga0059261_3383at 3513.706 kb on + strand, within Ga0059261_3383at 3513.706 kb on + strand, within Ga0059261_3383at 3513.706 kb on + strand, within Ga0059261_3383at 3513.706 kb on + strand, within Ga0059261_3383at 3513.707 kb on - strand, within Ga0059261_3383at 3513.707 kb on - strand, within Ga0059261_3383at 3513.707 kb on - strand, within Ga0059261_3383at 3513.707 kb on - strand, within Ga0059261_3383at 3513.767 kb on - strand, within Ga0059261_3383at 3513.817 kb on + strand, within Ga0059261_3383at 3513.818 kb on - strand, within Ga0059261_3383at 3513.818 kb on - strand, within Ga0059261_3383at 3513.818 kb on - strand, within Ga0059261_3383at 3513.830 kb on - strand, within Ga0059261_3383at 3513.862 kb on - strand, within Ga0059261_3383at 3513.917 kb on - strand, within Ga0059261_3383at 3513.917 kb on - strand, within Ga0059261_3383at 3513.917 kb on - strand, within Ga0059261_3383at 3513.917 kb on - strand, within Ga0059261_3383at 3514.237 kb on + strandat 3514.237 kb on + strandat 3515.838 kb on + strandat 3515.839 kb on - strandat 3516.374 kb on - strandat 3516.374 kb on - strandat 3516.401 kb on + strandat 3516.402 kb on - strandat 3516.472 kb on + strandat 3516.507 kb on + strandat 3516.507 kb on + strandat 3516.512 kb on + strandat 3516.512 kb on + strandat 3516.512 kb on + strandat 3516.512 kb on + strandat 3516.512 kb on + strandat 3516.512 kb on + strandat 3516.512 kb on + strandat 3516.512 kb on + strandat 3516.513 kb on - strandat 3516.513 kb on - strandat 3516.513 kb on - strandat 3516.513 kb on - strandat 3516.513 kb on - strandat 3516.513 kb on - strandat 3516.513 kb on - strandat 3516.513 kb on - strandat 3516.513 kb on - strandat 3516.735 kb on + strand, within Ga0059261_3386at 3516.735 kb on + strand, within Ga0059261_3386at 3516.735 kb on + strand, within Ga0059261_3386at 3516.735 kb on + strand, within Ga0059261_3386at 3516.735 kb on + strand, within Ga0059261_3386at 3516.735 kb on + strand, within Ga0059261_3386at 3516.735 kb on + strand, within Ga0059261_3386at 3516.735 kb on + strand, within Ga0059261_3386at 3516.735 kb on + strand, within Ga0059261_3386

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.005 mg/ml
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3,513,406 + Ga0059261_3382 0.86 -0.7
3,513,406 + Ga0059261_3382 0.86 +0.2
3,513,406 + Ga0059261_3382 0.86 +0.6
3,513,406 + Ga0059261_3382 0.86 -0.1
3,513,407 - Ga0059261_3382 0.86 -0.3
3,513,407 - Ga0059261_3382 0.86 -1.3
3,513,407 - Ga0059261_3382 0.86 -1.5
3,513,581 - -0.6
3,513,621 + +1.0
3,513,621 + -0.1
3,513,621 + -0.2
3,513,621 + +0.7
3,513,622 - -0.9
3,513,622 - -0.7
3,513,622 - +1.6
3,513,706 + Ga0059261_3383 0.15 -0.6
3,513,706 + Ga0059261_3383 0.15 -0.3
3,513,706 + Ga0059261_3383 0.15 -0.5
3,513,706 + Ga0059261_3383 0.15 -0.9
3,513,706 + Ga0059261_3383 0.15 -0.1
3,513,706 + Ga0059261_3383 0.15 -0.1
3,513,706 + Ga0059261_3383 0.15 -0.5
3,513,706 + Ga0059261_3383 0.15 -1.3
3,513,706 + Ga0059261_3383 0.15 -0.4
3,513,706 + Ga0059261_3383 0.15 -0.8
3,513,706 + Ga0059261_3383 0.15 -1.0
3,513,706 + Ga0059261_3383 0.15 -1.3
3,513,707 - Ga0059261_3383 0.15 -0.3
3,513,707 - Ga0059261_3383 0.15 -0.7
3,513,707 - Ga0059261_3383 0.15 -0.6
3,513,707 - Ga0059261_3383 0.15 -0.2
3,513,767 - Ga0059261_3383 0.25 -0.5
3,513,817 + Ga0059261_3383 0.33 -2.1
3,513,818 - Ga0059261_3383 0.33 +0.6
3,513,818 - Ga0059261_3383 0.33 -0.4
3,513,818 - Ga0059261_3383 0.33 -0.4
3,513,830 - Ga0059261_3383 0.35 -0.5
3,513,862 - Ga0059261_3383 0.40 -0.5
3,513,917 - Ga0059261_3383 0.49 -0.2
3,513,917 - Ga0059261_3383 0.49 -0.2
3,513,917 - Ga0059261_3383 0.49 +0.3
3,513,917 - Ga0059261_3383 0.49 +0.2
3,514,237 + +0.3
3,514,237 + +0.1
3,515,838 + +0.2
3,515,839 - +0.6
3,516,374 - -0.6
3,516,374 - -0.1
3,516,401 + -0.3
3,516,402 - -1.1
3,516,472 + +0.2
3,516,507 + +0.0
3,516,507 + -0.1
3,516,512 + +0.6
3,516,512 + -0.2
3,516,512 + +0.0
3,516,512 + -0.9
3,516,512 + -0.0
3,516,512 + +0.6
3,516,512 + +0.1
3,516,512 + -0.7
3,516,513 - -0.1
3,516,513 - +0.8
3,516,513 - +0.5
3,516,513 - -0.4
3,516,513 - +0.3
3,516,513 - -0.1
3,516,513 - -0.5
3,516,513 - -0.6
3,516,513 - +0.1
3,516,735 + Ga0059261_3386 0.12 +0.1
3,516,735 + Ga0059261_3386 0.12 +2.1
3,516,735 + Ga0059261_3386 0.12 +0.2
3,516,735 + Ga0059261_3386 0.12 -0.4
3,516,735 + Ga0059261_3386 0.12 +0.3
3,516,735 + Ga0059261_3386 0.12 +0.4
3,516,735 + Ga0059261_3386 0.12 +0.2
3,516,735 + Ga0059261_3386 0.12 -0.1
3,516,735 + Ga0059261_3386 0.12 -0.5

Or see this region's nucleotide sequence