Experiment: Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_2239 and Ga0059261_2240 are separated by 17 nucleotides Ga0059261_2240 and Ga0059261_2241 overlap by 4 nucleotides
Ga0059261_2239: Ga0059261_2239 - tRNA and rRNA cytosine-C5-methylases, at 2,339,069 to 2,340,349
_2239
Ga0059261_2240: Ga0059261_2240 - ribulose-phosphate 3-epimerase, at 2,340,367 to 2,341,026
_2240
Ga0059261_2241: Ga0059261_2241 - Uncharacterized protein conserved in bacteria, at 2,341,023 to 2,342,771
_2241
Position (kb)
2340
2341
2342 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2339.375 kb on - strand, within Ga0059261_2239 at 2339.375 kb on - strand, within Ga0059261_2239 at 2339.669 kb on - strand, within Ga0059261_2239 at 2339.669 kb on - strand, within Ga0059261_2239 at 2339.669 kb on - strand, within Ga0059261_2239 at 2339.748 kb on + strand, within Ga0059261_2239 at 2339.749 kb on - strand, within Ga0059261_2239 at 2340.122 kb on + strand, within Ga0059261_2239 at 2340.122 kb on + strand, within Ga0059261_2239 at 2340.122 kb on + strand, within Ga0059261_2239 at 2340.122 kb on + strand, within Ga0059261_2239 at 2340.122 kb on + strand, within Ga0059261_2239 at 2340.122 kb on + strand, within Ga0059261_2239 at 2340.122 kb on + strand, within Ga0059261_2239 at 2340.123 kb on - strand, within Ga0059261_2239 at 2340.123 kb on - strand, within Ga0059261_2239 at 2340.123 kb on - strand, within Ga0059261_2239 at 2340.123 kb on - strand, within Ga0059261_2239 at 2340.123 kb on - strand, within Ga0059261_2239 at 2340.123 kb on - strand at 2340.123 kb on - strand, within Ga0059261_2239 at 2340.123 kb on - strand, within Ga0059261_2239 at 2340.123 kb on - strand, within Ga0059261_2239 at 2340.123 kb on - strand, within Ga0059261_2239 at 2340.123 kb on - strand, within Ga0059261_2239 at 2340.123 kb on - strand, within Ga0059261_2239 at 2340.123 kb on - strand, within Ga0059261_2239 at 2340.123 kb on - strand, within Ga0059261_2239 at 2340.262 kb on - strand at 2340.277 kb on + strand at 2340.278 kb on - strand at 2340.355 kb on + strand at 2340.355 kb on + strand at 2340.355 kb on + strand at 2340.355 kb on + strand at 2340.355 kb on + strand at 2341.243 kb on + strand, within Ga0059261_2241 at 2341.362 kb on + strand at 2341.362 kb on + strand, within Ga0059261_2241 at 2341.363 kb on - strand, within Ga0059261_2241 at 2341.363 kb on - strand, within Ga0059261_2241 at 2341.363 kb on - strand, within Ga0059261_2241 at 2341.572 kb on + strand at 2341.573 kb on - strand, within Ga0059261_2241 at 2341.848 kb on + strand, within Ga0059261_2241 at 2341.848 kb on + strand, within Ga0059261_2241 at 2341.848 kb on + strand, within Ga0059261_2241 at 2341.848 kb on + strand, within Ga0059261_2241 at 2341.848 kb on + strand, within Ga0059261_2241 at 2341.848 kb on + strand, within Ga0059261_2241 at 2341.848 kb on + strand, within Ga0059261_2241 at 2341.848 kb on + strand, within Ga0059261_2241 at 2341.849 kb on - strand, within Ga0059261_2241 at 2341.849 kb on - strand, within Ga0059261_2241 at 2341.849 kb on - strand, within Ga0059261_2241 at 2341.849 kb on - strand, within Ga0059261_2241 at 2341.967 kb on - strand at 2341.982 kb on + strand, within Ga0059261_2241 at 2341.982 kb on + strand, within Ga0059261_2241 at 2341.982 kb on + strand, within Ga0059261_2241 at 2341.982 kb on + strand, within Ga0059261_2241 at 2341.982 kb on + strand, within Ga0059261_2241 at 2341.983 kb on - strand, within Ga0059261_2241 at 2341.983 kb on - strand, within Ga0059261_2241
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.005 mg/ml remove 2,339,375 - Ga0059261_2239 0.24 -1.5 2,339,375 - Ga0059261_2239 0.24 -0.3 2,339,669 - Ga0059261_2239 0.47 -0.6 2,339,669 - Ga0059261_2239 0.47 -0.9 2,339,669 - Ga0059261_2239 0.47 -1.4 2,339,748 + Ga0059261_2239 0.53 -0.2 2,339,749 - Ga0059261_2239 0.53 -0.9 2,340,122 + Ga0059261_2239 0.82 -0.2 2,340,122 + Ga0059261_2239 0.82 -0.6 2,340,122 + Ga0059261_2239 0.82 -0.2 2,340,122 + Ga0059261_2239 0.82 -0.5 2,340,122 + Ga0059261_2239 0.82 +0.2 2,340,122 + Ga0059261_2239 0.82 -0.3 2,340,122 + Ga0059261_2239 0.82 -1.6 2,340,123 - Ga0059261_2239 0.82 -0.7 2,340,123 - Ga0059261_2239 0.82 -0.0 2,340,123 - Ga0059261_2239 0.82 -1.2 2,340,123 - Ga0059261_2239 0.82 -0.3 2,340,123 - Ga0059261_2239 0.82 -0.7 2,340,123 - -0.5 2,340,123 - Ga0059261_2239 0.82 -0.5 2,340,123 - Ga0059261_2239 0.82 +0.1 2,340,123 - Ga0059261_2239 0.82 +0.6 2,340,123 - Ga0059261_2239 0.82 -0.6 2,340,123 - Ga0059261_2239 0.82 -0.2 2,340,123 - Ga0059261_2239 0.82 -0.9 2,340,123 - Ga0059261_2239 0.82 -1.8 2,340,123 - Ga0059261_2239 0.82 -0.3 2,340,262 - -0.8 2,340,277 + -0.2 2,340,278 - -0.3 2,340,355 + -0.0 2,340,355 + -0.8 2,340,355 + -0.8 2,340,355 + -1.3 2,340,355 + -1.5 2,341,243 + Ga0059261_2241 0.13 +1.3 2,341,362 + -0.2 2,341,362 + Ga0059261_2241 0.19 +0.5 2,341,363 - Ga0059261_2241 0.19 -0.2 2,341,363 - Ga0059261_2241 0.19 +0.8 2,341,363 - Ga0059261_2241 0.19 -0.2 2,341,572 + +0.5 2,341,573 - Ga0059261_2241 0.31 +0.6 2,341,848 + Ga0059261_2241 0.47 -0.8 2,341,848 + Ga0059261_2241 0.47 -0.5 2,341,848 + Ga0059261_2241 0.47 +1.3 2,341,848 + Ga0059261_2241 0.47 -1.5 2,341,848 + Ga0059261_2241 0.47 +0.2 2,341,848 + Ga0059261_2241 0.47 -1.0 2,341,848 + Ga0059261_2241 0.47 +0.1 2,341,848 + Ga0059261_2241 0.47 +0.2 2,341,849 - Ga0059261_2241 0.47 -0.7 2,341,849 - Ga0059261_2241 0.47 +0.6 2,341,849 - Ga0059261_2241 0.47 -2.7 2,341,849 - Ga0059261_2241 0.47 -0.0 2,341,967 - +1.8 2,341,982 + Ga0059261_2241 0.55 -0.2 2,341,982 + Ga0059261_2241 0.55 -0.5 2,341,982 + Ga0059261_2241 0.55 +0.4 2,341,982 + Ga0059261_2241 0.55 +0.3 2,341,982 + Ga0059261_2241 0.55 +0.7 2,341,983 - Ga0059261_2241 0.55 +0.8 2,341,983 - Ga0059261_2241 0.55 -1.3
Or see this region's nucleotide sequence