Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2032

Experiment: Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2031 and Ga0059261_2032 are separated by 262 nucleotidesGa0059261_2032 and Ga0059261_2033 are separated by 212 nucleotidesGa0059261_2033 and Ga0059261_2034 are separated by 179 nucleotides Ga0059261_2031: Ga0059261_2031 - Phospholipase A1, at 2,133,530 to 2,134,636 _2031 Ga0059261_2032: Ga0059261_2032 - Heat shock protein, at 2,134,899 to 2,135,618 _2032 Ga0059261_2033: Ga0059261_2033 - tRNA, at 2,135,831 to 2,135,920 _2033 Ga0059261_2034: Ga0059261_2034 - Uncharacterized protein conserved in bacteria, at 2,136,100 to 2,136,879 _2034 Position (kb) 2134 2135 2136Strain fitness (log2 ratio) -3 -2 -1 0 1at 2134.008 kb on + strand, within Ga0059261_2031at 2134.009 kb on - strand, within Ga0059261_2031at 2134.015 kb on + strand, within Ga0059261_2031at 2134.015 kb on + strand, within Ga0059261_2031at 2134.015 kb on + strand, within Ga0059261_2031at 2134.015 kb on + strand, within Ga0059261_2031at 2134.015 kb on + strand, within Ga0059261_2031at 2134.015 kb on + strand, within Ga0059261_2031at 2134.015 kb on + strand, within Ga0059261_2031at 2134.016 kb on - strand, within Ga0059261_2031at 2134.016 kb on - strand, within Ga0059261_2031at 2134.016 kb on - strand, within Ga0059261_2031at 2134.016 kb on - strand, within Ga0059261_2031at 2134.016 kb on - strand, within Ga0059261_2031at 2134.016 kb on - strand, within Ga0059261_2031at 2134.016 kb on - strandat 2134.016 kb on - strand, within Ga0059261_2031at 2134.066 kb on + strand, within Ga0059261_2031at 2134.066 kb on + strand, within Ga0059261_2031at 2134.068 kb on + strand, within Ga0059261_2031at 2134.068 kb on + strand, within Ga0059261_2031at 2134.068 kb on + strand, within Ga0059261_2031at 2134.068 kb on + strand, within Ga0059261_2031at 2134.069 kb on - strand, within Ga0059261_2031at 2134.170 kb on + strand, within Ga0059261_2031at 2134.170 kb on + strand, within Ga0059261_2031at 2134.170 kb on + strand, within Ga0059261_2031at 2134.170 kb on + strand, within Ga0059261_2031at 2134.170 kb on + strand, within Ga0059261_2031at 2134.297 kb on - strand, within Ga0059261_2031at 2134.356 kb on + strand, within Ga0059261_2031at 2134.357 kb on - strand, within Ga0059261_2031at 2134.371 kb on + strand, within Ga0059261_2031at 2134.371 kb on + strand, within Ga0059261_2031at 2134.371 kb on + strand, within Ga0059261_2031at 2134.372 kb on - strand, within Ga0059261_2031at 2134.372 kb on - strand, within Ga0059261_2031at 2134.372 kb on - strand, within Ga0059261_2031at 2134.828 kb on - strandat 2134.828 kb on - strandat 2134.859 kb on + strandat 2134.859 kb on + strandat 2134.859 kb on + strandat 2134.859 kb on + strandat 2134.859 kb on + strandat 2134.859 kb on + strandat 2134.859 kb on + strandat 2134.859 kb on + strandat 2134.860 kb on - strandat 2134.860 kb on - strandat 2134.860 kb on - strandat 2135.005 kb on + strand, within Ga0059261_2032at 2135.047 kb on + strand, within Ga0059261_2032at 2135.047 kb on + strand, within Ga0059261_2032at 2135.048 kb on - strand, within Ga0059261_2032at 2135.048 kb on - strand, within Ga0059261_2032at 2135.140 kb on + strand, within Ga0059261_2032at 2135.140 kb on + strand, within Ga0059261_2032at 2135.140 kb on + strand, within Ga0059261_2032at 2135.140 kb on + strand, within Ga0059261_2032at 2135.140 kb on + strand, within Ga0059261_2032at 2135.140 kb on + strand, within Ga0059261_2032at 2135.140 kb on + strand, within Ga0059261_2032at 2135.140 kb on + strand, within Ga0059261_2032at 2135.141 kb on - strand, within Ga0059261_2032at 2135.141 kb on - strandat 2135.141 kb on - strand, within Ga0059261_2032at 2135.141 kb on - strand, within Ga0059261_2032at 2135.141 kb on - strand, within Ga0059261_2032at 2135.141 kb on - strand, within Ga0059261_2032at 2135.141 kb on - strand, within Ga0059261_2032at 2135.141 kb on - strand, within Ga0059261_2032at 2135.141 kb on - strand, within Ga0059261_2032at 2135.141 kb on - strand, within Ga0059261_2032at 2135.141 kb on - strand, within Ga0059261_2032at 2135.188 kb on + strand, within Ga0059261_2032at 2135.188 kb on + strand, within Ga0059261_2032at 2135.188 kb on + strand, within Ga0059261_2032at 2135.188 kb on + strand, within Ga0059261_2032at 2135.189 kb on - strand, within Ga0059261_2032at 2135.189 kb on - strand, within Ga0059261_2032at 2135.189 kb on - strand, within Ga0059261_2032at 2135.189 kb on - strand, within Ga0059261_2032at 2135.189 kb on - strand, within Ga0059261_2032at 2135.189 kb on - strand, within Ga0059261_2032at 2135.189 kb on - strand, within Ga0059261_2032at 2135.245 kb on + strand, within Ga0059261_2032at 2135.246 kb on - strand, within Ga0059261_2032at 2135.275 kb on + strand, within Ga0059261_2032at 2135.275 kb on + strand, within Ga0059261_2032at 2135.275 kb on + strand, within Ga0059261_2032at 2135.275 kb on + strand, within Ga0059261_2032at 2135.275 kb on + strand, within Ga0059261_2032at 2135.275 kb on + strand, within Ga0059261_2032at 2135.275 kb on + strand, within Ga0059261_2032at 2135.276 kb on - strand, within Ga0059261_2032at 2135.276 kb on - strand, within Ga0059261_2032at 2135.276 kb on - strand, within Ga0059261_2032at 2135.276 kb on - strand, within Ga0059261_2032at 2135.276 kb on - strand, within Ga0059261_2032at 2135.670 kb on + strandat 2135.671 kb on - strandat 2135.671 kb on - strandat 2135.671 kb on - strandat 2135.671 kb on - strandat 2136.096 kb on + strandat 2136.096 kb on + strandat 2136.096 kb on + strandat 2136.096 kb on + strandat 2136.096 kb on + strandat 2136.096 kb on + strandat 2136.096 kb on + strandat 2136.096 kb on + strandat 2136.096 kb on + strandat 2136.096 kb on + strandat 2136.096 kb on + strandat 2136.096 kb on + strandat 2136.096 kb on + strandat 2136.096 kb on + strandat 2136.097 kb on - strandat 2136.097 kb on - strandat 2136.097 kb on - strandat 2136.097 kb on - strandat 2136.298 kb on + strand, within Ga0059261_2034at 2136.299 kb on - strand, within Ga0059261_2034at 2136.514 kb on + strand, within Ga0059261_2034at 2136.514 kb on + strand, within Ga0059261_2034at 2136.514 kb on + strandat 2136.514 kb on + strand, within Ga0059261_2034at 2136.514 kb on + strand, within Ga0059261_2034at 2136.514 kb on + strand, within Ga0059261_2034at 2136.514 kb on + strand, within Ga0059261_2034at 2136.514 kb on + strand, within Ga0059261_2034at 2136.515 kb on - strand, within Ga0059261_2034at 2136.515 kb on - strand, within Ga0059261_2034at 2136.515 kb on - strand, within Ga0059261_2034at 2136.515 kb on - strand, within Ga0059261_2034at 2136.515 kb on - strand, within Ga0059261_2034at 2136.515 kb on - strand, within Ga0059261_2034at 2136.515 kb on - strand, within Ga0059261_2034at 2136.515 kb on - strand, within Ga0059261_2034at 2136.515 kb on - strand, within Ga0059261_2034at 2136.515 kb on - strand, within Ga0059261_2034at 2136.515 kb on - strand, within Ga0059261_2034at 2136.515 kb on - strand, within Ga0059261_2034at 2136.516 kb on + strand, within Ga0059261_2034at 2136.516 kb on + strand, within Ga0059261_2034at 2136.516 kb on + strand, within Ga0059261_2034at 2136.517 kb on - strand, within Ga0059261_2034at 2136.517 kb on - strand, within Ga0059261_2034

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.005 mg/ml
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2,134,008 + Ga0059261_2031 0.43 -0.1
2,134,009 - Ga0059261_2031 0.43 -0.4
2,134,015 + Ga0059261_2031 0.44 +0.1
2,134,015 + Ga0059261_2031 0.44 -0.2
2,134,015 + Ga0059261_2031 0.44 -0.2
2,134,015 + Ga0059261_2031 0.44 -0.5
2,134,015 + Ga0059261_2031 0.44 -0.6
2,134,015 + Ga0059261_2031 0.44 -0.3
2,134,015 + Ga0059261_2031 0.44 -0.1
2,134,016 - Ga0059261_2031 0.44 -0.7
2,134,016 - Ga0059261_2031 0.44 +0.4
2,134,016 - Ga0059261_2031 0.44 -1.6
2,134,016 - Ga0059261_2031 0.44 -0.3
2,134,016 - Ga0059261_2031 0.44 +0.1
2,134,016 - Ga0059261_2031 0.44 -0.2
2,134,016 - +0.4
2,134,016 - Ga0059261_2031 0.44 -0.4
2,134,066 + Ga0059261_2031 0.48 -0.2
2,134,066 + Ga0059261_2031 0.48 +1.2
2,134,068 + Ga0059261_2031 0.49 +0.0
2,134,068 + Ga0059261_2031 0.49 +0.3
2,134,068 + Ga0059261_2031 0.49 -0.8
2,134,068 + Ga0059261_2031 0.49 -0.5
2,134,069 - Ga0059261_2031 0.49 -0.5
2,134,170 + Ga0059261_2031 0.58 -0.1
2,134,170 + Ga0059261_2031 0.58 -0.2
2,134,170 + Ga0059261_2031 0.58 -0.5
2,134,170 + Ga0059261_2031 0.58 +0.6
2,134,170 + Ga0059261_2031 0.58 +0.9
2,134,297 - Ga0059261_2031 0.69 -0.8
2,134,356 + Ga0059261_2031 0.75 +0.3
2,134,357 - Ga0059261_2031 0.75 -0.4
2,134,371 + Ga0059261_2031 0.76 +0.0
2,134,371 + Ga0059261_2031 0.76 -1.5
2,134,371 + Ga0059261_2031 0.76 +0.3
2,134,372 - Ga0059261_2031 0.76 +0.1
2,134,372 - Ga0059261_2031 0.76 -0.4
2,134,372 - Ga0059261_2031 0.76 +0.0
2,134,828 - -0.1
2,134,828 - +0.2
2,134,859 + +0.8
2,134,859 + -0.0
2,134,859 + +0.4
2,134,859 + +0.0
2,134,859 + +0.3
2,134,859 + +0.3
2,134,859 + +0.1
2,134,859 + +0.4
2,134,860 - +0.6
2,134,860 - -0.8
2,134,860 - +0.0
2,135,005 + Ga0059261_2032 0.15 +0.3
2,135,047 + Ga0059261_2032 0.21 -0.2
2,135,047 + Ga0059261_2032 0.21 +0.3
2,135,048 - Ga0059261_2032 0.21 +0.2
2,135,048 - Ga0059261_2032 0.21 -0.8
2,135,140 + Ga0059261_2032 0.33 -0.8
2,135,140 + Ga0059261_2032 0.33 -1.1
2,135,140 + Ga0059261_2032 0.33 -0.2
2,135,140 + Ga0059261_2032 0.33 -1.2
2,135,140 + Ga0059261_2032 0.33 -0.2
2,135,140 + Ga0059261_2032 0.33 -0.6
2,135,140 + Ga0059261_2032 0.33 -0.3
2,135,140 + Ga0059261_2032 0.33 +0.3
2,135,141 - Ga0059261_2032 0.34 -0.1
2,135,141 - +0.8
2,135,141 - Ga0059261_2032 0.34 +0.4
2,135,141 - Ga0059261_2032 0.34 +0.7
2,135,141 - Ga0059261_2032 0.34 +0.3
2,135,141 - Ga0059261_2032 0.34 +1.2
2,135,141 - Ga0059261_2032 0.34 -1.1
2,135,141 - Ga0059261_2032 0.34 -0.7
2,135,141 - Ga0059261_2032 0.34 +0.2
2,135,141 - Ga0059261_2032 0.34 +0.4
2,135,141 - Ga0059261_2032 0.34 +0.2
2,135,188 + Ga0059261_2032 0.40 +0.1
2,135,188 + Ga0059261_2032 0.40 +0.0
2,135,188 + Ga0059261_2032 0.40 -0.0
2,135,188 + Ga0059261_2032 0.40 +0.8
2,135,189 - Ga0059261_2032 0.40 -0.1
2,135,189 - Ga0059261_2032 0.40 -1.0
2,135,189 - Ga0059261_2032 0.40 -0.5
2,135,189 - Ga0059261_2032 0.40 +0.3
2,135,189 - Ga0059261_2032 0.40 -0.2
2,135,189 - Ga0059261_2032 0.40 -0.1
2,135,189 - Ga0059261_2032 0.40 -0.8
2,135,245 + Ga0059261_2032 0.48 -1.2
2,135,246 - Ga0059261_2032 0.48 -0.1
2,135,275 + Ga0059261_2032 0.52 -0.1
2,135,275 + Ga0059261_2032 0.52 -0.5
2,135,275 + Ga0059261_2032 0.52 -0.3
2,135,275 + Ga0059261_2032 0.52 -0.1
2,135,275 + Ga0059261_2032 0.52 +0.4
2,135,275 + Ga0059261_2032 0.52 -0.5
2,135,275 + Ga0059261_2032 0.52 -0.4
2,135,276 - Ga0059261_2032 0.52 +0.1
2,135,276 - Ga0059261_2032 0.52 -0.7
2,135,276 - Ga0059261_2032 0.52 +0.5
2,135,276 - Ga0059261_2032 0.52 +0.4
2,135,276 - Ga0059261_2032 0.52 -1.2
2,135,670 + +0.3
2,135,671 - -0.4
2,135,671 - -0.4
2,135,671 - -0.6
2,135,671 - -0.4
2,136,096 + -1.2
2,136,096 + -0.2
2,136,096 + -1.8
2,136,096 + -0.6
2,136,096 + -0.4
2,136,096 + -0.0
2,136,096 + -0.8
2,136,096 + -0.6
2,136,096 + -0.6
2,136,096 + -0.2
2,136,096 + -0.4
2,136,096 + -0.9
2,136,096 + -1.6
2,136,096 + -0.7
2,136,097 - -1.2
2,136,097 - -1.0
2,136,097 - -0.2
2,136,097 - -0.9
2,136,298 + Ga0059261_2034 0.25 -0.5
2,136,299 - Ga0059261_2034 0.26 -1.6
2,136,514 + Ga0059261_2034 0.53 -0.5
2,136,514 + Ga0059261_2034 0.53 +1.0
2,136,514 + +0.4
2,136,514 + Ga0059261_2034 0.53 +0.0
2,136,514 + Ga0059261_2034 0.53 -0.8
2,136,514 + Ga0059261_2034 0.53 -2.7
2,136,514 + Ga0059261_2034 0.53 -0.2
2,136,514 + Ga0059261_2034 0.53 -1.2
2,136,515 - Ga0059261_2034 0.53 -0.8
2,136,515 - Ga0059261_2034 0.53 -1.1
2,136,515 - Ga0059261_2034 0.53 -0.7
2,136,515 - Ga0059261_2034 0.53 -1.3
2,136,515 - Ga0059261_2034 0.53 -1.5
2,136,515 - Ga0059261_2034 0.53 -0.7
2,136,515 - Ga0059261_2034 0.53 -1.1
2,136,515 - Ga0059261_2034 0.53 -1.3
2,136,515 - Ga0059261_2034 0.53 -3.1
2,136,515 - Ga0059261_2034 0.53 +0.1
2,136,515 - Ga0059261_2034 0.53 -1.1
2,136,515 - Ga0059261_2034 0.53 -3.1
2,136,516 + Ga0059261_2034 0.53 -0.4
2,136,516 + Ga0059261_2034 0.53 -1.3
2,136,516 + Ga0059261_2034 0.53 -2.2
2,136,517 - Ga0059261_2034 0.53 -1.5
2,136,517 - Ga0059261_2034 0.53 -0.3

Or see this region's nucleotide sequence