Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1259

Experiment: Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1258 and Ga0059261_1259 are separated by 57 nucleotidesGa0059261_1259 and Ga0059261_1260 overlap by 4 nucleotides Ga0059261_1258: Ga0059261_1258 - TonB-dependent siderophore receptor, at 1,323,622 to 1,325,934 _1258 Ga0059261_1259: Ga0059261_1259 - Ribbon-helix-helix domain, at 1,325,992 to 1,326,270 _1259 Ga0059261_1260: Ga0059261_1260 - cobaltochelatase CobT subunit (EC 6.6.1.2), at 1,326,267 to 1,328,099 _1260 Position (kb) 1325 1326 1327Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1325.126 kb on + strand, within Ga0059261_1258at 1325.126 kb on + strand, within Ga0059261_1258at 1325.127 kb on - strand, within Ga0059261_1258at 1325.127 kb on - strand, within Ga0059261_1258at 1325.127 kb on - strand, within Ga0059261_1258at 1325.127 kb on - strand, within Ga0059261_1258at 1325.141 kb on + strand, within Ga0059261_1258at 1325.141 kb on + strand, within Ga0059261_1258at 1325.141 kb on + strand, within Ga0059261_1258at 1325.141 kb on + strand, within Ga0059261_1258at 1325.141 kb on + strand, within Ga0059261_1258at 1325.142 kb on - strand, within Ga0059261_1258at 1325.144 kb on + strand, within Ga0059261_1258at 1325.144 kb on + strand, within Ga0059261_1258at 1325.144 kb on + strand, within Ga0059261_1258at 1325.145 kb on - strand, within Ga0059261_1258at 1325.145 kb on - strand, within Ga0059261_1258at 1325.156 kb on + strand, within Ga0059261_1258at 1325.157 kb on - strand, within Ga0059261_1258at 1325.189 kb on + strand, within Ga0059261_1258at 1325.189 kb on + strand, within Ga0059261_1258at 1325.189 kb on + strand, within Ga0059261_1258at 1325.189 kb on + strand, within Ga0059261_1258at 1325.189 kb on + strand, within Ga0059261_1258at 1325.189 kb on + strand, within Ga0059261_1258at 1325.189 kb on + strand, within Ga0059261_1258at 1325.189 kb on + strand, within Ga0059261_1258at 1325.190 kb on - strand, within Ga0059261_1258at 1325.190 kb on - strand, within Ga0059261_1258at 1325.190 kb on - strand, within Ga0059261_1258at 1325.190 kb on - strand, within Ga0059261_1258at 1325.258 kb on + strand, within Ga0059261_1258at 1325.259 kb on - strand, within Ga0059261_1258at 1325.364 kb on - strand, within Ga0059261_1258at 1325.366 kb on + strand, within Ga0059261_1258at 1325.367 kb on - strand, within Ga0059261_1258at 1325.367 kb on - strandat 1325.367 kb on - strand, within Ga0059261_1258at 1325.367 kb on - strand, within Ga0059261_1258at 1325.468 kb on + strand, within Ga0059261_1258at 1325.468 kb on + strand, within Ga0059261_1258at 1325.468 kb on + strand, within Ga0059261_1258at 1325.469 kb on - strand, within Ga0059261_1258at 1325.469 kb on - strandat 1325.469 kb on - strand, within Ga0059261_1258at 1325.469 kb on - strand, within Ga0059261_1258at 1325.469 kb on - strand, within Ga0059261_1258at 1325.469 kb on - strand, within Ga0059261_1258at 1325.532 kb on - strand, within Ga0059261_1258at 1325.954 kb on + strandat 1325.954 kb on + strandat 1325.954 kb on + strandat 1325.954 kb on + strandat 1326.187 kb on + strand, within Ga0059261_1259at 1326.187 kb on + strand, within Ga0059261_1259at 1326.187 kb on + strand, within Ga0059261_1259at 1326.187 kb on + strand, within Ga0059261_1259at 1326.187 kb on + strand, within Ga0059261_1259at 1326.188 kb on - strand, within Ga0059261_1259at 1326.188 kb on - strand, within Ga0059261_1259at 1326.355 kb on + strandat 1326.355 kb on + strandat 1326.355 kb on + strandat 1326.355 kb on + strandat 1326.356 kb on - strandat 1326.356 kb on - strandat 1326.356 kb on - strandat 1326.358 kb on + strandat 1326.358 kb on + strandat 1326.359 kb on - strandat 1326.454 kb on + strand, within Ga0059261_1260at 1326.454 kb on + strand, within Ga0059261_1260at 1326.455 kb on - strand, within Ga0059261_1260at 1326.455 kb on - strand, within Ga0059261_1260at 1326.664 kb on + strand, within Ga0059261_1260at 1326.664 kb on + strand, within Ga0059261_1260at 1326.665 kb on + strand, within Ga0059261_1260at 1326.665 kb on - strand, within Ga0059261_1260at 1326.928 kb on + strand, within Ga0059261_1260at 1326.928 kb on + strand, within Ga0059261_1260at 1326.928 kb on + strand, within Ga0059261_1260at 1326.929 kb on - strand, within Ga0059261_1260at 1326.929 kb on - strand, within Ga0059261_1260at 1326.929 kb on - strand, within Ga0059261_1260at 1326.929 kb on - strand, within Ga0059261_1260at 1327.102 kb on + strand, within Ga0059261_1260at 1327.102 kb on + strand, within Ga0059261_1260at 1327.165 kb on + strand, within Ga0059261_1260at 1327.165 kb on + strand, within Ga0059261_1260at 1327.165 kb on + strand, within Ga0059261_1260at 1327.165 kb on + strand, within Ga0059261_1260at 1327.165 kb on + strand, within Ga0059261_1260at 1327.166 kb on - strand, within Ga0059261_1260at 1327.166 kb on - strand, within Ga0059261_1260at 1327.166 kb on - strand, within Ga0059261_1260at 1327.184 kb on + strand, within Ga0059261_1260at 1327.184 kb on + strand, within Ga0059261_1260at 1327.184 kb on + strand, within Ga0059261_1260at 1327.185 kb on - strand, within Ga0059261_1260at 1327.185 kb on - strand, within Ga0059261_1260at 1327.185 kb on - strand, within Ga0059261_1260at 1327.185 kb on - strand, within Ga0059261_1260at 1327.187 kb on - strand, within Ga0059261_1260at 1327.187 kb on - strand, within Ga0059261_1260

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.005 mg/ml
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1,325,126 + Ga0059261_1258 0.65 +0.7
1,325,126 + Ga0059261_1258 0.65 +1.0
1,325,127 - Ga0059261_1258 0.65 -0.4
1,325,127 - Ga0059261_1258 0.65 -1.5
1,325,127 - Ga0059261_1258 0.65 -0.3
1,325,127 - Ga0059261_1258 0.65 -0.3
1,325,141 + Ga0059261_1258 0.66 +0.3
1,325,141 + Ga0059261_1258 0.66 +0.7
1,325,141 + Ga0059261_1258 0.66 +0.6
1,325,141 + Ga0059261_1258 0.66 +0.4
1,325,141 + Ga0059261_1258 0.66 +0.6
1,325,142 - Ga0059261_1258 0.66 +0.2
1,325,144 + Ga0059261_1258 0.66 -0.1
1,325,144 + Ga0059261_1258 0.66 -0.1
1,325,144 + Ga0059261_1258 0.66 +0.7
1,325,145 - Ga0059261_1258 0.66 -0.2
1,325,145 - Ga0059261_1258 0.66 -1.4
1,325,156 + Ga0059261_1258 0.66 +0.5
1,325,157 - Ga0059261_1258 0.66 +0.0
1,325,189 + Ga0059261_1258 0.68 -0.0
1,325,189 + Ga0059261_1258 0.68 +1.6
1,325,189 + Ga0059261_1258 0.68 +0.3
1,325,189 + Ga0059261_1258 0.68 +0.5
1,325,189 + Ga0059261_1258 0.68 -0.1
1,325,189 + Ga0059261_1258 0.68 -0.2
1,325,189 + Ga0059261_1258 0.68 +0.1
1,325,189 + Ga0059261_1258 0.68 -0.6
1,325,190 - Ga0059261_1258 0.68 +0.6
1,325,190 - Ga0059261_1258 0.68 -0.3
1,325,190 - Ga0059261_1258 0.68 +0.5
1,325,190 - Ga0059261_1258 0.68 +0.5
1,325,258 + Ga0059261_1258 0.71 +0.5
1,325,259 - Ga0059261_1258 0.71 +0.3
1,325,364 - Ga0059261_1258 0.75 +0.2
1,325,366 + Ga0059261_1258 0.75 +0.3
1,325,367 - Ga0059261_1258 0.75 +0.1
1,325,367 - +0.6
1,325,367 - Ga0059261_1258 0.75 -0.4
1,325,367 - Ga0059261_1258 0.75 -0.6
1,325,468 + Ga0059261_1258 0.80 +0.2
1,325,468 + Ga0059261_1258 0.80 -0.2
1,325,468 + Ga0059261_1258 0.80 +1.0
1,325,469 - Ga0059261_1258 0.80 -0.1
1,325,469 - +1.2
1,325,469 - Ga0059261_1258 0.80 +0.0
1,325,469 - Ga0059261_1258 0.80 -1.4
1,325,469 - Ga0059261_1258 0.80 +1.3
1,325,469 - Ga0059261_1258 0.80 -0.5
1,325,532 - Ga0059261_1258 0.83 +1.0
1,325,954 + +0.1
1,325,954 + +0.1
1,325,954 + +0.1
1,325,954 + -0.4
1,326,187 + Ga0059261_1259 0.70 +0.6
1,326,187 + Ga0059261_1259 0.70 +0.7
1,326,187 + Ga0059261_1259 0.70 -0.4
1,326,187 + Ga0059261_1259 0.70 -2.3
1,326,187 + Ga0059261_1259 0.70 +0.1
1,326,188 - Ga0059261_1259 0.70 -0.1
1,326,188 - Ga0059261_1259 0.70 +0.3
1,326,355 + -0.7
1,326,355 + -0.6
1,326,355 + -1.0
1,326,355 + -1.4
1,326,356 - -1.9
1,326,356 - -1.3
1,326,356 - -2.5
1,326,358 + -1.1
1,326,358 + -1.0
1,326,359 - -0.9
1,326,454 + Ga0059261_1260 0.10 -2.1
1,326,454 + Ga0059261_1260 0.10 -1.4
1,326,455 - Ga0059261_1260 0.10 -2.0
1,326,455 - Ga0059261_1260 0.10 -2.1
1,326,664 + Ga0059261_1260 0.22 -1.8
1,326,664 + Ga0059261_1260 0.22 -0.7
1,326,665 + Ga0059261_1260 0.22 -2.7
1,326,665 - Ga0059261_1260 0.22 -3.7
1,326,928 + Ga0059261_1260 0.36 -2.0
1,326,928 + Ga0059261_1260 0.36 -2.5
1,326,928 + Ga0059261_1260 0.36 -1.0
1,326,929 - Ga0059261_1260 0.36 -3.6
1,326,929 - Ga0059261_1260 0.36 -1.8
1,326,929 - Ga0059261_1260 0.36 -1.8
1,326,929 - Ga0059261_1260 0.36 -2.1
1,327,102 + Ga0059261_1260 0.46 -2.8
1,327,102 + Ga0059261_1260 0.46 -1.5
1,327,165 + Ga0059261_1260 0.49 -1.2
1,327,165 + Ga0059261_1260 0.49 -1.7
1,327,165 + Ga0059261_1260 0.49 -2.4
1,327,165 + Ga0059261_1260 0.49 -0.5
1,327,165 + Ga0059261_1260 0.49 -3.9
1,327,166 - Ga0059261_1260 0.49 -2.4
1,327,166 - Ga0059261_1260 0.49 -2.1
1,327,166 - Ga0059261_1260 0.49 -3.0
1,327,184 + Ga0059261_1260 0.50 -2.4
1,327,184 + Ga0059261_1260 0.50 -3.1
1,327,184 + Ga0059261_1260 0.50 -2.1
1,327,185 - Ga0059261_1260 0.50 -1.3
1,327,185 - Ga0059261_1260 0.50 -1.4
1,327,185 - Ga0059261_1260 0.50 -3.6
1,327,185 - Ga0059261_1260 0.50 -1.6
1,327,187 - Ga0059261_1260 0.50 -3.1
1,327,187 - Ga0059261_1260 0.50 -2.9

Or see this region's nucleotide sequence