Experiment: Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_1033 and Ga0059261_1034 overlap by 4 nucleotides Ga0059261_1034 and Ga0059261_1035 overlap by 4 nucleotides Ga0059261_1035 and Ga0059261_1036 are separated by 3 nucleotides Ga0059261_1036 and Ga0059261_1037 are separated by 56 nucleotides Ga0059261_1037 and Ga0059261_1038 are separated by 29 nucleotides
Ga0059261_1033: Ga0059261_1033 - pseudouridine synthase, RluA family, at 1,070,706 to 1,071,851
_1033
Ga0059261_1034: Ga0059261_1034 - haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 1,071,848 to 1,072,507
_1034
Ga0059261_1035: Ga0059261_1035 - hypothetical protein, at 1,072,504 to 1,072,725
_1035
Ga0059261_1036: Ga0059261_1036 - Chaperone required for the assembly of the mitochondrial F1-ATPase, at 1,072,729 to 1,073,418
_1036
Ga0059261_1037: Ga0059261_1037 - hypothetical protein, at 1,073,475 to 1,074,065
_1037
Ga0059261_1038: Ga0059261_1038 - guanylate kinase (EC 2.7.4.8), at 1,074,095 to 1,074,769
_1038
Position (kb)
1072
1073
1074 Strain fitness (log2 ratio)
-1
0
1
2 at 1071.904 kb on + strand at 1071.904 kb on + strand at 1071.904 kb on + strand at 1071.905 kb on - strand at 1071.905 kb on - strand at 1071.905 kb on - strand at 1071.905 kb on - strand at 1072.061 kb on + strand, within Ga0059261_1034 at 1072.061 kb on + strand, within Ga0059261_1034 at 1072.061 kb on + strand, within Ga0059261_1034 at 1072.061 kb on + strand, within Ga0059261_1034 at 1072.061 kb on + strand, within Ga0059261_1034 at 1072.062 kb on - strand, within Ga0059261_1034 at 1072.062 kb on - strand, within Ga0059261_1034 at 1072.062 kb on - strand, within Ga0059261_1034 at 1072.062 kb on - strand, within Ga0059261_1034 at 1072.062 kb on - strand, within Ga0059261_1034 at 1072.062 kb on - strand, within Ga0059261_1034 at 1072.062 kb on - strand, within Ga0059261_1034 at 1072.062 kb on - strand, within Ga0059261_1034 at 1072.062 kb on - strand, within Ga0059261_1034 at 1072.063 kb on + strand, within Ga0059261_1034 at 1072.063 kb on + strand, within Ga0059261_1034 at 1072.063 kb on + strand, within Ga0059261_1034 at 1072.063 kb on + strand, within Ga0059261_1034 at 1072.063 kb on + strand, within Ga0059261_1034 at 1072.063 kb on + strand, within Ga0059261_1034 at 1072.064 kb on - strand, within Ga0059261_1034 at 1072.064 kb on - strand at 1072.064 kb on - strand, within Ga0059261_1034 at 1072.064 kb on - strand, within Ga0059261_1034 at 1072.064 kb on - strand, within Ga0059261_1034 at 1072.064 kb on - strand, within Ga0059261_1034 at 1072.064 kb on - strand, within Ga0059261_1034 at 1072.127 kb on - strand, within Ga0059261_1034 at 1072.503 kb on + strand at 1072.531 kb on + strand, within Ga0059261_1035 at 1072.657 kb on + strand at 1072.657 kb on + strand, within Ga0059261_1035 at 1072.657 kb on + strand, within Ga0059261_1035 at 1072.710 kb on + strand at 1072.723 kb on + strand at 1073.417 kb on - strand at 1073.417 kb on - strand at 1073.593 kb on + strand, within Ga0059261_1037 at 1073.593 kb on + strand, within Ga0059261_1037 at 1073.593 kb on + strand, within Ga0059261_1037 at 1073.593 kb on + strand, within Ga0059261_1037 at 1073.594 kb on - strand, within Ga0059261_1037 at 1073.594 kb on - strand, within Ga0059261_1037 at 1073.594 kb on - strand, within Ga0059261_1037 at 1073.602 kb on + strand, within Ga0059261_1037 at 1073.602 kb on + strand, within Ga0059261_1037 at 1073.602 kb on + strand, within Ga0059261_1037 at 1073.602 kb on + strand, within Ga0059261_1037 at 1073.602 kb on + strand, within Ga0059261_1037 at 1073.603 kb on - strand, within Ga0059261_1037 at 1073.647 kb on + strand, within Ga0059261_1037 at 1073.647 kb on + strand, within Ga0059261_1037 at 1073.647 kb on + strand, within Ga0059261_1037 at 1073.647 kb on + strand, within Ga0059261_1037 at 1073.647 kb on + strand, within Ga0059261_1037 at 1073.647 kb on + strand, within Ga0059261_1037 at 1073.647 kb on + strand, within Ga0059261_1037 at 1073.648 kb on - strand, within Ga0059261_1037 at 1073.648 kb on - strand, within Ga0059261_1037 at 1073.648 kb on - strand, within Ga0059261_1037 at 1073.648 kb on - strand, within Ga0059261_1037 at 1073.789 kb on + strand, within Ga0059261_1037 at 1073.790 kb on - strand, within Ga0059261_1037 at 1073.980 kb on + strand, within Ga0059261_1037 at 1073.980 kb on + strand, within Ga0059261_1037 at 1073.980 kb on + strand, within Ga0059261_1037 at 1073.981 kb on - strand, within Ga0059261_1037 at 1073.981 kb on - strand, within Ga0059261_1037 at 1074.012 kb on + strand at 1074.012 kb on + strand at 1074.012 kb on + strand at 1074.012 kb on + strand at 1074.012 kb on + strand at 1074.013 kb on - strand at 1074.013 kb on - strand at 1074.013 kb on - strand at 1074.051 kb on + strand at 1074.052 kb on - strand at 1074.052 kb on - strand at 1074.097 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.005 mg/ml remove 1,071,904 + +0.4 1,071,904 + +0.7 1,071,904 + +0.3 1,071,905 - -0.3 1,071,905 - +1.8 1,071,905 - +0.5 1,071,905 - +0.0 1,072,061 + Ga0059261_1034 0.32 +0.4 1,072,061 + Ga0059261_1034 0.32 +0.2 1,072,061 + Ga0059261_1034 0.32 +0.3 1,072,061 + Ga0059261_1034 0.32 -0.1 1,072,061 + Ga0059261_1034 0.32 +0.0 1,072,062 - Ga0059261_1034 0.32 -0.1 1,072,062 - Ga0059261_1034 0.32 +0.4 1,072,062 - Ga0059261_1034 0.32 -0.8 1,072,062 - Ga0059261_1034 0.32 -0.5 1,072,062 - Ga0059261_1034 0.32 -0.4 1,072,062 - Ga0059261_1034 0.32 +0.2 1,072,062 - Ga0059261_1034 0.32 -0.7 1,072,062 - Ga0059261_1034 0.32 -0.3 1,072,062 - Ga0059261_1034 0.32 +0.7 1,072,063 + Ga0059261_1034 0.33 -0.2 1,072,063 + Ga0059261_1034 0.33 -0.9 1,072,063 + Ga0059261_1034 0.33 +0.3 1,072,063 + Ga0059261_1034 0.33 +0.9 1,072,063 + Ga0059261_1034 0.33 -0.3 1,072,063 + Ga0059261_1034 0.33 +0.8 1,072,064 - Ga0059261_1034 0.33 -0.0 1,072,064 - -1.2 1,072,064 - Ga0059261_1034 0.33 -0.2 1,072,064 - Ga0059261_1034 0.33 +0.4 1,072,064 - Ga0059261_1034 0.33 -0.0 1,072,064 - Ga0059261_1034 0.33 -0.3 1,072,064 - Ga0059261_1034 0.33 -0.2 1,072,127 - Ga0059261_1034 0.42 -0.2 1,072,503 + -0.2 1,072,531 + Ga0059261_1035 0.12 -1.2 1,072,657 + +1.6 1,072,657 + Ga0059261_1035 0.69 +0.8 1,072,657 + Ga0059261_1035 0.69 -0.3 1,072,710 + +0.6 1,072,723 + +0.0 1,073,417 - +0.8 1,073,417 - +0.1 1,073,593 + Ga0059261_1037 0.20 +0.3 1,073,593 + Ga0059261_1037 0.20 +0.2 1,073,593 + Ga0059261_1037 0.20 -0.5 1,073,593 + Ga0059261_1037 0.20 -0.4 1,073,594 - Ga0059261_1037 0.20 -0.7 1,073,594 - Ga0059261_1037 0.20 +0.5 1,073,594 - Ga0059261_1037 0.20 -0.2 1,073,602 + Ga0059261_1037 0.21 +0.0 1,073,602 + Ga0059261_1037 0.21 -1.5 1,073,602 + Ga0059261_1037 0.21 +0.3 1,073,602 + Ga0059261_1037 0.21 +0.0 1,073,602 + Ga0059261_1037 0.21 +0.2 1,073,603 - Ga0059261_1037 0.22 -0.2 1,073,647 + Ga0059261_1037 0.29 -0.5 1,073,647 + Ga0059261_1037 0.29 -0.4 1,073,647 + Ga0059261_1037 0.29 +1.0 1,073,647 + Ga0059261_1037 0.29 +1.2 1,073,647 + Ga0059261_1037 0.29 +0.4 1,073,647 + Ga0059261_1037 0.29 -0.5 1,073,647 + Ga0059261_1037 0.29 -0.3 1,073,648 - Ga0059261_1037 0.29 -0.7 1,073,648 - Ga0059261_1037 0.29 -0.5 1,073,648 - Ga0059261_1037 0.29 +0.4 1,073,648 - Ga0059261_1037 0.29 +0.3 1,073,789 + Ga0059261_1037 0.53 -0.6 1,073,790 - Ga0059261_1037 0.53 +0.6 1,073,980 + Ga0059261_1037 0.85 -0.5 1,073,980 + Ga0059261_1037 0.85 -1.2 1,073,980 + Ga0059261_1037 0.85 -0.5 1,073,981 - Ga0059261_1037 0.86 -0.4 1,073,981 - Ga0059261_1037 0.86 -0.7 1,074,012 + -0.1 1,074,012 + +0.7 1,074,012 + +0.2 1,074,012 + +0.6 1,074,012 + -1.4 1,074,013 - +0.0 1,074,013 - -0.6 1,074,013 - +0.3 1,074,051 + +1.6 1,074,052 - +0.0 1,074,052 - +0.4 1,074,097 - -0.1
Or see this region's nucleotide sequence