Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0923

Experiment: Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0922 and Ga0059261_0923 are separated by 9 nucleotidesGa0059261_0923 and Ga0059261_0924 are separated by 11 nucleotides Ga0059261_0922: Ga0059261_0922 - cysteinyl-tRNA synthetase (EC 6.1.1.16), at 953,690 to 955,120 _0922 Ga0059261_0923: Ga0059261_0923 - Uncharacterized protein conserved in bacteria, at 955,130 to 956,500 _0923 Ga0059261_0924: Ga0059261_0924 - Uncharacterized protein conserved in bacteria, at 956,512 to 958,257 _0924 Position (kb) 955 956 957Strain fitness (log2 ratio) -2 -1 0 1 2 3at 955.119 kb on - strandat 955.119 kb on - strandat 955.158 kb on + strandat 955.158 kb on + strandat 955.158 kb on + strandat 955.158 kb on + strandat 955.158 kb on + strandat 955.159 kb on - strandat 955.159 kb on - strandat 955.233 kb on + strandat 955.233 kb on + strandat 955.233 kb on + strandat 955.233 kb on + strandat 955.233 kb on + strandat 955.233 kb on + strandat 955.233 kb on + strandat 955.234 kb on - strandat 955.234 kb on - strandat 955.234 kb on - strandat 955.234 kb on - strandat 955.234 kb on - strandat 955.234 kb on - strandat 955.317 kb on + strand, within Ga0059261_0923at 955.317 kb on + strand, within Ga0059261_0923at 955.317 kb on + strand, within Ga0059261_0923at 955.317 kb on + strand, within Ga0059261_0923at 955.317 kb on + strand, within Ga0059261_0923at 955.318 kb on - strand, within Ga0059261_0923at 955.318 kb on - strand, within Ga0059261_0923at 955.318 kb on - strand, within Ga0059261_0923at 955.436 kb on + strand, within Ga0059261_0923at 955.437 kb on - strand, within Ga0059261_0923at 955.437 kb on - strand, within Ga0059261_0923at 955.437 kb on - strand, within Ga0059261_0923at 955.437 kb on - strand, within Ga0059261_0923at 955.465 kb on + strand, within Ga0059261_0923at 955.466 kb on - strand, within Ga0059261_0923at 955.466 kb on - strand, within Ga0059261_0923at 955.468 kb on + strand, within Ga0059261_0923at 955.468 kb on + strand, within Ga0059261_0923at 955.469 kb on - strand, within Ga0059261_0923at 955.473 kb on + strand, within Ga0059261_0923at 955.473 kb on + strand, within Ga0059261_0923at 955.474 kb on - strandat 955.474 kb on - strand, within Ga0059261_0923at 955.474 kb on - strand, within Ga0059261_0923at 955.713 kb on + strand, within Ga0059261_0923at 955.713 kb on + strand, within Ga0059261_0923at 955.713 kb on + strand, within Ga0059261_0923at 955.713 kb on + strand, within Ga0059261_0923at 955.713 kb on + strand, within Ga0059261_0923at 955.714 kb on - strand, within Ga0059261_0923at 955.714 kb on - strand, within Ga0059261_0923at 955.821 kb on + strand, within Ga0059261_0923at 955.821 kb on + strand, within Ga0059261_0923at 955.875 kb on + strand, within Ga0059261_0923at 955.875 kb on + strand, within Ga0059261_0923at 955.875 kb on + strand, within Ga0059261_0923at 955.875 kb on + strand, within Ga0059261_0923at 955.875 kb on + strand, within Ga0059261_0923at 955.875 kb on + strand, within Ga0059261_0923at 955.875 kb on + strand, within Ga0059261_0923at 955.876 kb on - strand, within Ga0059261_0923at 955.876 kb on - strand, within Ga0059261_0923at 955.876 kb on - strand, within Ga0059261_0923at 955.876 kb on - strand, within Ga0059261_0923at 955.876 kb on - strand, within Ga0059261_0923at 955.902 kb on + strand, within Ga0059261_0923at 955.902 kb on + strand, within Ga0059261_0923at 955.902 kb on + strand, within Ga0059261_0923at 955.903 kb on - strand, within Ga0059261_0923at 955.903 kb on - strand, within Ga0059261_0923at 955.903 kb on - strand, within Ga0059261_0923at 955.903 kb on - strand, within Ga0059261_0923at 955.903 kb on - strand, within Ga0059261_0923at 955.903 kb on - strand, within Ga0059261_0923at 956.025 kb on + strand, within Ga0059261_0923at 956.025 kb on + strand, within Ga0059261_0923at 956.025 kb on + strand, within Ga0059261_0923at 956.026 kb on - strand, within Ga0059261_0923at 956.026 kb on - strand, within Ga0059261_0923at 956.026 kb on - strand, within Ga0059261_0923at 956.026 kb on - strand, within Ga0059261_0923at 956.026 kb on - strand, within Ga0059261_0923at 956.026 kb on - strand, within Ga0059261_0923at 956.086 kb on - strand, within Ga0059261_0923at 956.086 kb on - strand, within Ga0059261_0923at 956.193 kb on + strand, within Ga0059261_0923at 956.193 kb on + strandat 956.193 kb on + strand, within Ga0059261_0923at 956.193 kb on + strand, within Ga0059261_0923at 956.284 kb on - strand, within Ga0059261_0923at 956.307 kb on + strand, within Ga0059261_0923at 956.320 kb on + strand, within Ga0059261_0923at 956.320 kb on + strand, within Ga0059261_0923at 956.321 kb on - strand, within Ga0059261_0923at 956.321 kb on - strandat 956.321 kb on - strand, within Ga0059261_0923at 956.321 kb on - strand, within Ga0059261_0923at 956.328 kb on + strand, within Ga0059261_0923at 956.328 kb on + strand, within Ga0059261_0923at 956.328 kb on + strand, within Ga0059261_0923at 956.329 kb on - strand, within Ga0059261_0923at 956.329 kb on - strand, within Ga0059261_0923at 956.329 kb on - strand, within Ga0059261_0923at 956.329 kb on - strand, within Ga0059261_0923at 956.329 kb on - strand, within Ga0059261_0923at 956.343 kb on + strand, within Ga0059261_0923at 956.344 kb on - strand, within Ga0059261_0923at 956.344 kb on - strand, within Ga0059261_0923at 956.368 kb on + strandat 956.368 kb on + strandat 956.368 kb on + strandat 956.368 kb on + strandat 956.369 kb on - strandat 956.369 kb on - strandat 956.369 kb on - strandat 956.369 kb on - strandat 956.369 kb on - strandat 956.370 kb on + strandat 956.371 kb on - strandat 956.371 kb on - strandat 956.371 kb on - strandat 956.371 kb on - strandat 956.528 kb on + strandat 956.528 kb on + strandat 956.580 kb on + strandat 956.580 kb on + strandat 956.580 kb on + strandat 956.580 kb on + strandat 956.580 kb on + strandat 956.580 kb on + strandat 956.581 kb on - strandat 956.581 kb on - strandat 956.711 kb on + strand, within Ga0059261_0924at 956.711 kb on + strand, within Ga0059261_0924at 956.711 kb on + strand, within Ga0059261_0924at 956.712 kb on - strand, within Ga0059261_0924at 956.712 kb on - strand, within Ga0059261_0924at 956.712 kb on - strand, within Ga0059261_0924at 956.712 kb on - strand, within Ga0059261_0924at 956.712 kb on - strand, within Ga0059261_0924at 956.759 kb on + strand, within Ga0059261_0924at 956.759 kb on + strand, within Ga0059261_0924at 956.759 kb on + strand, within Ga0059261_0924at 956.759 kb on + strand, within Ga0059261_0924at 956.759 kb on + strand, within Ga0059261_0924at 956.759 kb on + strand, within Ga0059261_0924at 956.759 kb on + strand, within Ga0059261_0924at 956.760 kb on - strand, within Ga0059261_0924at 956.760 kb on - strand, within Ga0059261_0924at 956.760 kb on - strand, within Ga0059261_0924at 956.760 kb on - strand, within Ga0059261_0924at 956.760 kb on - strand, within Ga0059261_0924at 956.760 kb on - strand, within Ga0059261_0924at 956.760 kb on - strand, within Ga0059261_0924at 956.760 kb on - strand, within Ga0059261_0924at 956.760 kb on - strand, within Ga0059261_0924at 956.760 kb on - strand, within Ga0059261_0924at 956.760 kb on - strand, within Ga0059261_0924at 956.760 kb on - strand, within Ga0059261_0924at 956.764 kb on + strand, within Ga0059261_0924at 956.764 kb on + strand, within Ga0059261_0924at 956.764 kb on + strand, within Ga0059261_0924at 956.764 kb on + strand, within Ga0059261_0924at 956.764 kb on + strand, within Ga0059261_0924at 956.764 kb on + strand, within Ga0059261_0924at 956.764 kb on + strand, within Ga0059261_0924at 956.764 kb on + strand, within Ga0059261_0924at 956.764 kb on + strand, within Ga0059261_0924at 956.764 kb on + strand, within Ga0059261_0924at 956.764 kb on + strand, within Ga0059261_0924at 956.765 kb on - strand, within Ga0059261_0924at 956.765 kb on - strand, within Ga0059261_0924at 956.768 kb on + strand, within Ga0059261_0924at 956.768 kb on + strand, within Ga0059261_0924at 956.839 kb on - strand, within Ga0059261_0924at 956.850 kb on + strandat 956.850 kb on + strand, within Ga0059261_0924at 956.851 kb on - strand, within Ga0059261_0924at 956.851 kb on - strand, within Ga0059261_0924at 956.851 kb on - strand, within Ga0059261_0924at 956.851 kb on - strand, within Ga0059261_0924at 956.852 kb on + strand, within Ga0059261_0924at 956.852 kb on + strand, within Ga0059261_0924at 956.852 kb on + strand, within Ga0059261_0924at 956.853 kb on - strand, within Ga0059261_0924at 956.853 kb on - strand, within Ga0059261_0924at 956.853 kb on - strand, within Ga0059261_0924at 957.143 kb on + strand, within Ga0059261_0924at 957.143 kb on + strand, within Ga0059261_0924at 957.143 kb on + strand, within Ga0059261_0924at 957.143 kb on + strand, within Ga0059261_0924at 957.144 kb on - strand, within Ga0059261_0924at 957.144 kb on - strand, within Ga0059261_0924at 957.144 kb on - strand, within Ga0059261_0924at 957.144 kb on - strand, within Ga0059261_0924at 957.144 kb on - strand, within Ga0059261_0924at 957.360 kb on + strand, within Ga0059261_0924at 957.360 kb on + strand, within Ga0059261_0924at 957.360 kb on + strand, within Ga0059261_0924at 957.360 kb on + strand, within Ga0059261_0924at 957.360 kb on + strand, within Ga0059261_0924at 957.360 kb on + strand, within Ga0059261_0924at 957.360 kb on + strand, within Ga0059261_0924at 957.360 kb on + strand, within Ga0059261_0924at 957.361 kb on - strand, within Ga0059261_0924at 957.361 kb on - strand, within Ga0059261_0924at 957.361 kb on - strand, within Ga0059261_0924at 957.361 kb on - strand, within Ga0059261_0924at 957.426 kb on + strand, within Ga0059261_0924at 957.426 kb on + strand, within Ga0059261_0924at 957.428 kb on + strand, within Ga0059261_0924at 957.428 kb on + strand, within Ga0059261_0924at 957.428 kb on + strand, within Ga0059261_0924at 957.428 kb on + strand, within Ga0059261_0924at 957.428 kb on + strand, within Ga0059261_0924at 957.428 kb on + strand, within Ga0059261_0924at 957.428 kb on + strand, within Ga0059261_0924at 957.429 kb on - strand, within Ga0059261_0924at 957.429 kb on - strand, within Ga0059261_0924at 957.429 kb on - strand, within Ga0059261_0924at 957.429 kb on - strand, within Ga0059261_0924at 957.429 kb on - strand, within Ga0059261_0924at 957.429 kb on - strand, within Ga0059261_0924

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.005 mg/ml
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955,119 - +0.8
955,119 - +0.6
955,158 + -0.4
955,158 + +1.1
955,158 + -0.6
955,158 + +0.0
955,158 + +0.1
955,159 - -0.3
955,159 - +0.3
955,233 + +0.5
955,233 + +1.6
955,233 + +0.8
955,233 + -0.7
955,233 + +0.5
955,233 + -0.1
955,233 + +0.9
955,234 - +0.4
955,234 - +0.5
955,234 - -0.1
955,234 - -0.1
955,234 - -1.2
955,234 - +0.1
955,317 + Ga0059261_0923 0.14 +1.2
955,317 + Ga0059261_0923 0.14 +0.1
955,317 + Ga0059261_0923 0.14 +1.0
955,317 + Ga0059261_0923 0.14 -0.1
955,317 + Ga0059261_0923 0.14 -1.4
955,318 - Ga0059261_0923 0.14 +0.0
955,318 - Ga0059261_0923 0.14 -0.3
955,318 - Ga0059261_0923 0.14 -0.2
955,436 + Ga0059261_0923 0.22 -0.0
955,437 - Ga0059261_0923 0.22 +0.2
955,437 - Ga0059261_0923 0.22 +0.9
955,437 - Ga0059261_0923 0.22 -0.0
955,437 - Ga0059261_0923 0.22 -0.2
955,465 + Ga0059261_0923 0.24 +0.5
955,466 - Ga0059261_0923 0.25 -0.6
955,466 - Ga0059261_0923 0.25 +0.2
955,468 + Ga0059261_0923 0.25 +0.6
955,468 + Ga0059261_0923 0.25 -0.3
955,469 - Ga0059261_0923 0.25 +0.3
955,473 + Ga0059261_0923 0.25 -0.1
955,473 + Ga0059261_0923 0.25 -0.2
955,474 - +0.6
955,474 - Ga0059261_0923 0.25 -0.1
955,474 - Ga0059261_0923 0.25 +1.5
955,713 + Ga0059261_0923 0.43 -0.1
955,713 + Ga0059261_0923 0.43 +0.4
955,713 + Ga0059261_0923 0.43 +1.1
955,713 + Ga0059261_0923 0.43 +0.0
955,713 + Ga0059261_0923 0.43 +0.3
955,714 - Ga0059261_0923 0.43 -0.2
955,714 - Ga0059261_0923 0.43 -1.1
955,821 + Ga0059261_0923 0.50 -0.9
955,821 + Ga0059261_0923 0.50 -0.2
955,875 + Ga0059261_0923 0.54 -1.0
955,875 + Ga0059261_0923 0.54 +0.4
955,875 + Ga0059261_0923 0.54 +0.2
955,875 + Ga0059261_0923 0.54 +1.1
955,875 + Ga0059261_0923 0.54 +0.3
955,875 + Ga0059261_0923 0.54 +0.3
955,875 + Ga0059261_0923 0.54 +0.3
955,876 - Ga0059261_0923 0.54 -0.3
955,876 - Ga0059261_0923 0.54 +0.3
955,876 - Ga0059261_0923 0.54 -0.1
955,876 - Ga0059261_0923 0.54 +0.1
955,876 - Ga0059261_0923 0.54 -0.3
955,902 + Ga0059261_0923 0.56 -0.6
955,902 + Ga0059261_0923 0.56 +0.1
955,902 + Ga0059261_0923 0.56 -0.1
955,903 - Ga0059261_0923 0.56 -0.6
955,903 - Ga0059261_0923 0.56 +0.4
955,903 - Ga0059261_0923 0.56 +0.2
955,903 - Ga0059261_0923 0.56 -0.3
955,903 - Ga0059261_0923 0.56 -0.1
955,903 - Ga0059261_0923 0.56 +0.6
956,025 + Ga0059261_0923 0.65 -0.3
956,025 + Ga0059261_0923 0.65 -1.3
956,025 + Ga0059261_0923 0.65 +0.4
956,026 - Ga0059261_0923 0.65 -0.3
956,026 - Ga0059261_0923 0.65 -0.1
956,026 - Ga0059261_0923 0.65 -0.6
956,026 - Ga0059261_0923 0.65 +0.2
956,026 - Ga0059261_0923 0.65 +0.0
956,026 - Ga0059261_0923 0.65 -2.1
956,086 - Ga0059261_0923 0.70 +0.4
956,086 - Ga0059261_0923 0.70 +0.6
956,193 + Ga0059261_0923 0.78 -0.5
956,193 + -1.0
956,193 + Ga0059261_0923 0.78 +0.8
956,193 + Ga0059261_0923 0.78 +0.5
956,284 - Ga0059261_0923 0.84 +0.6
956,307 + Ga0059261_0923 0.86 +0.1
956,320 + Ga0059261_0923 0.87 -0.4
956,320 + Ga0059261_0923 0.87 +1.0
956,321 - Ga0059261_0923 0.87 +0.2
956,321 - +1.6
956,321 - Ga0059261_0923 0.87 +1.4
956,321 - Ga0059261_0923 0.87 +0.9
956,328 + Ga0059261_0923 0.87 +0.0
956,328 + Ga0059261_0923 0.87 -0.3
956,328 + Ga0059261_0923 0.87 -0.3
956,329 - Ga0059261_0923 0.87 +0.5
956,329 - Ga0059261_0923 0.87 +0.4
956,329 - Ga0059261_0923 0.87 +0.4
956,329 - Ga0059261_0923 0.87 +0.3
956,329 - Ga0059261_0923 0.87 -0.9
956,343 + Ga0059261_0923 0.88 +0.7
956,344 - Ga0059261_0923 0.89 +0.2
956,344 - Ga0059261_0923 0.89 +0.4
956,368 + +0.4
956,368 + -0.5
956,368 + -0.4
956,368 + -0.3
956,369 - -0.4
956,369 - -0.6
956,369 - -1.0
956,369 - +0.6
956,369 - -0.6
956,370 + +0.3
956,371 - -0.3
956,371 - -0.3
956,371 - -0.5
956,371 - -1.0
956,528 + -0.4
956,528 + +0.1
956,580 + -1.1
956,580 + +0.1
956,580 + +3.2
956,580 + -0.1
956,580 + -1.9
956,580 + +0.3
956,581 - +0.2
956,581 - +1.1
956,711 + Ga0059261_0924 0.11 -0.6
956,711 + Ga0059261_0924 0.11 -0.1
956,711 + Ga0059261_0924 0.11 -0.3
956,712 - Ga0059261_0924 0.11 +0.0
956,712 - Ga0059261_0924 0.11 +2.2
956,712 - Ga0059261_0924 0.11 -1.4
956,712 - Ga0059261_0924 0.11 +0.5
956,712 - Ga0059261_0924 0.11 -0.4
956,759 + Ga0059261_0924 0.14 -0.1
956,759 + Ga0059261_0924 0.14 +0.2
956,759 + Ga0059261_0924 0.14 -0.2
956,759 + Ga0059261_0924 0.14 -0.1
956,759 + Ga0059261_0924 0.14 -0.1
956,759 + Ga0059261_0924 0.14 +0.2
956,759 + Ga0059261_0924 0.14 +1.6
956,760 - Ga0059261_0924 0.14 -1.2
956,760 - Ga0059261_0924 0.14 -0.6
956,760 - Ga0059261_0924 0.14 -0.6
956,760 - Ga0059261_0924 0.14 -0.6
956,760 - Ga0059261_0924 0.14 -0.4
956,760 - Ga0059261_0924 0.14 -0.0
956,760 - Ga0059261_0924 0.14 +0.5
956,760 - Ga0059261_0924 0.14 +0.1
956,760 - Ga0059261_0924 0.14 +0.3
956,760 - Ga0059261_0924 0.14 -0.6
956,760 - Ga0059261_0924 0.14 +0.7
956,760 - Ga0059261_0924 0.14 +0.2
956,764 + Ga0059261_0924 0.14 +0.3
956,764 + Ga0059261_0924 0.14 +1.2
956,764 + Ga0059261_0924 0.14 -1.5
956,764 + Ga0059261_0924 0.14 -0.8
956,764 + Ga0059261_0924 0.14 -1.2
956,764 + Ga0059261_0924 0.14 +0.3
956,764 + Ga0059261_0924 0.14 -0.6
956,764 + Ga0059261_0924 0.14 -0.2
956,764 + Ga0059261_0924 0.14 -0.1
956,764 + Ga0059261_0924 0.14 -0.4
956,764 + Ga0059261_0924 0.14 +0.1
956,765 - Ga0059261_0924 0.14 -0.3
956,765 - Ga0059261_0924 0.14 -0.2
956,768 + Ga0059261_0924 0.15 +0.1
956,768 + Ga0059261_0924 0.15 -0.0
956,839 - Ga0059261_0924 0.19 +0.0
956,850 + +0.6
956,850 + Ga0059261_0924 0.19 +0.1
956,851 - Ga0059261_0924 0.19 +0.2
956,851 - Ga0059261_0924 0.19 +0.1
956,851 - Ga0059261_0924 0.19 +0.4
956,851 - Ga0059261_0924 0.19 -0.5
956,852 + Ga0059261_0924 0.19 -0.6
956,852 + Ga0059261_0924 0.19 -1.2
956,852 + Ga0059261_0924 0.19 -0.9
956,853 - Ga0059261_0924 0.20 +0.4
956,853 - Ga0059261_0924 0.20 +0.2
956,853 - Ga0059261_0924 0.20 +0.1
957,143 + Ga0059261_0924 0.36 +0.4
957,143 + Ga0059261_0924 0.36 -0.6
957,143 + Ga0059261_0924 0.36 -0.9
957,143 + Ga0059261_0924 0.36 -0.4
957,144 - Ga0059261_0924 0.36 -0.2
957,144 - Ga0059261_0924 0.36 +1.0
957,144 - Ga0059261_0924 0.36 -0.2
957,144 - Ga0059261_0924 0.36 +0.3
957,144 - Ga0059261_0924 0.36 -0.1
957,360 + Ga0059261_0924 0.49 -0.4
957,360 + Ga0059261_0924 0.49 +0.1
957,360 + Ga0059261_0924 0.49 +2.1
957,360 + Ga0059261_0924 0.49 -0.3
957,360 + Ga0059261_0924 0.49 +0.6
957,360 + Ga0059261_0924 0.49 -0.1
957,360 + Ga0059261_0924 0.49 +0.2
957,360 + Ga0059261_0924 0.49 +0.2
957,361 - Ga0059261_0924 0.49 -0.4
957,361 - Ga0059261_0924 0.49 +0.4
957,361 - Ga0059261_0924 0.49 +0.3
957,361 - Ga0059261_0924 0.49 -0.8
957,426 + Ga0059261_0924 0.52 -0.4
957,426 + Ga0059261_0924 0.52 +0.8
957,428 + Ga0059261_0924 0.52 +2.3
957,428 + Ga0059261_0924 0.52 -0.3
957,428 + Ga0059261_0924 0.52 +0.4
957,428 + Ga0059261_0924 0.52 -0.3
957,428 + Ga0059261_0924 0.52 -1.4
957,428 + Ga0059261_0924 0.52 -0.7
957,428 + Ga0059261_0924 0.52 -0.6
957,429 - Ga0059261_0924 0.53 -1.2
957,429 - Ga0059261_0924 0.53 -0.0
957,429 - Ga0059261_0924 0.53 +0.2
957,429 - Ga0059261_0924 0.53 +1.2
957,429 - Ga0059261_0924 0.53 +0.3
957,429 - Ga0059261_0924 0.53 +0.0

Or see this region's nucleotide sequence