Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0835

Experiment: Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0833 and Ga0059261_0834 overlap by 1 nucleotidesGa0059261_0834 and Ga0059261_0835 are separated by 30 nucleotidesGa0059261_0835 and Ga0059261_0836 are separated by 146 nucleotides Ga0059261_0833: Ga0059261_0833 - Glycerol kinase, at 870,869 to 872,344 _0833 Ga0059261_0834: Ga0059261_0834 - hypothetical protein, at 872,344 to 872,481 _0834 Ga0059261_0835: Ga0059261_0835 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 872,512 to 874,260 _0835 Ga0059261_0836: Ga0059261_0836 - Beta-lactamase class C and other penicillin binding proteins, at 874,407 to 875,633 _0836 Position (kb) 872 873 874 875Strain fitness (log2 ratio) -1 0 1 2at 871.640 kb on - strand, within Ga0059261_0833at 871.657 kb on + strand, within Ga0059261_0833at 871.658 kb on - strand, within Ga0059261_0833at 871.757 kb on + strand, within Ga0059261_0833at 871.757 kb on + strand, within Ga0059261_0833at 871.757 kb on + strand, within Ga0059261_0833at 871.757 kb on + strand, within Ga0059261_0833at 871.758 kb on - strand, within Ga0059261_0833at 871.758 kb on - strand, within Ga0059261_0833at 871.758 kb on - strand, within Ga0059261_0833at 871.886 kb on + strand, within Ga0059261_0833at 871.886 kb on + strand, within Ga0059261_0833at 871.886 kb on + strand, within Ga0059261_0833at 871.886 kb on + strand, within Ga0059261_0833at 871.887 kb on - strand, within Ga0059261_0833at 871.887 kb on - strand, within Ga0059261_0833at 871.887 kb on - strand, within Ga0059261_0833at 871.887 kb on - strand, within Ga0059261_0833at 871.887 kb on - strand, within Ga0059261_0833at 871.887 kb on - strand, within Ga0059261_0833at 871.887 kb on - strand, within Ga0059261_0833at 871.887 kb on - strand, within Ga0059261_0833at 872.089 kb on + strand, within Ga0059261_0833at 872.090 kb on - strandat 872.090 kb on - strand, within Ga0059261_0833at 872.090 kb on - strand, within Ga0059261_0833at 872.207 kb on + strandat 872.283 kb on + strandat 872.283 kb on + strandat 872.283 kb on + strandat 872.283 kb on + strandat 872.283 kb on + strandat 872.283 kb on + strandat 872.283 kb on + strandat 872.284 kb on - strandat 872.284 kb on - strandat 872.284 kb on - strandat 872.381 kb on - strand, within Ga0059261_0834at 872.381 kb on - strand, within Ga0059261_0834at 872.381 kb on - strand, within Ga0059261_0834at 872.408 kb on + strand, within Ga0059261_0834at 872.408 kb on + strand, within Ga0059261_0834at 872.408 kb on + strand, within Ga0059261_0834at 872.408 kb on + strand, within Ga0059261_0834at 872.409 kb on - strand, within Ga0059261_0834at 872.409 kb on - strand, within Ga0059261_0834at 872.409 kb on - strand, within Ga0059261_0834at 872.409 kb on - strand, within Ga0059261_0834at 872.409 kb on - strand, within Ga0059261_0834at 872.506 kb on + strandat 872.513 kb on + strandat 872.513 kb on + strandat 872.514 kb on - strandat 872.514 kb on - strandat 872.514 kb on - strandat 872.724 kb on + strand, within Ga0059261_0835at 872.774 kb on + strand, within Ga0059261_0835at 872.774 kb on + strand, within Ga0059261_0835at 872.774 kb on + strand, within Ga0059261_0835at 872.775 kb on - strand, within Ga0059261_0835at 872.801 kb on + strand, within Ga0059261_0835at 872.801 kb on + strand, within Ga0059261_0835at 872.802 kb on - strand, within Ga0059261_0835at 872.802 kb on - strand, within Ga0059261_0835at 872.805 kb on + strand, within Ga0059261_0835at 872.805 kb on + strand, within Ga0059261_0835at 872.805 kb on + strand, within Ga0059261_0835at 872.805 kb on + strand, within Ga0059261_0835at 872.805 kb on + strand, within Ga0059261_0835at 872.806 kb on - strand, within Ga0059261_0835at 872.806 kb on - strand, within Ga0059261_0835at 872.806 kb on - strand, within Ga0059261_0835at 872.806 kb on - strand, within Ga0059261_0835at 872.806 kb on - strand, within Ga0059261_0835at 872.806 kb on - strand, within Ga0059261_0835at 872.806 kb on - strand, within Ga0059261_0835at 872.806 kb on - strandat 872.806 kb on - strand, within Ga0059261_0835at 872.945 kb on + strand, within Ga0059261_0835at 872.946 kb on - strand, within Ga0059261_0835at 873.083 kb on + strand, within Ga0059261_0835at 873.083 kb on + strand, within Ga0059261_0835at 873.084 kb on - strand, within Ga0059261_0835at 873.084 kb on - strand, within Ga0059261_0835at 873.084 kb on - strand, within Ga0059261_0835at 873.084 kb on - strand, within Ga0059261_0835at 873.167 kb on + strand, within Ga0059261_0835at 873.167 kb on + strand, within Ga0059261_0835at 873.167 kb on + strand, within Ga0059261_0835at 873.168 kb on - strand, within Ga0059261_0835at 873.168 kb on - strand, within Ga0059261_0835at 873.168 kb on - strand, within Ga0059261_0835at 873.168 kb on - strand, within Ga0059261_0835at 873.168 kb on - strand, within Ga0059261_0835at 873.209 kb on + strand, within Ga0059261_0835at 873.209 kb on + strand, within Ga0059261_0835at 873.209 kb on + strand, within Ga0059261_0835at 873.210 kb on - strand, within Ga0059261_0835at 873.239 kb on + strand, within Ga0059261_0835at 873.239 kb on + strand, within Ga0059261_0835at 873.239 kb on + strand, within Ga0059261_0835at 873.239 kb on + strand, within Ga0059261_0835at 873.239 kb on + strand, within Ga0059261_0835at 873.240 kb on - strand, within Ga0059261_0835at 873.240 kb on - strand, within Ga0059261_0835at 873.488 kb on + strand, within Ga0059261_0835at 873.522 kb on + strand, within Ga0059261_0835at 873.522 kb on + strandat 873.523 kb on - strand, within Ga0059261_0835at 873.523 kb on - strand, within Ga0059261_0835at 873.587 kb on + strand, within Ga0059261_0835at 873.587 kb on + strand, within Ga0059261_0835at 873.587 kb on + strand, within Ga0059261_0835at 873.785 kb on + strand, within Ga0059261_0835at 873.785 kb on + strand, within Ga0059261_0835at 873.786 kb on - strand, within Ga0059261_0835at 873.836 kb on + strand, within Ga0059261_0835at 873.837 kb on - strand, within Ga0059261_0835at 874.207 kb on + strandat 874.324 kb on - strandat 874.401 kb on + strandat 874.402 kb on - strandat 874.407 kb on - strandat 874.494 kb on + strandat 874.495 kb on - strandat 874.495 kb on - strandat 874.495 kb on - strandat 874.495 kb on - strandat 874.743 kb on + strand, within Ga0059261_0836at 874.743 kb on + strand, within Ga0059261_0836at 874.743 kb on + strand, within Ga0059261_0836at 874.743 kb on + strand, within Ga0059261_0836at 874.743 kb on + strand, within Ga0059261_0836at 874.744 kb on - strand, within Ga0059261_0836at 874.744 kb on - strand, within Ga0059261_0836at 874.744 kb on - strand, within Ga0059261_0836at 874.745 kb on + strand, within Ga0059261_0836at 874.745 kb on + strand, within Ga0059261_0836at 874.745 kb on + strand, within Ga0059261_0836at 874.746 kb on - strand, within Ga0059261_0836at 874.746 kb on - strand, within Ga0059261_0836at 874.839 kb on + strand, within Ga0059261_0836at 874.839 kb on + strand, within Ga0059261_0836at 874.839 kb on + strand, within Ga0059261_0836at 874.839 kb on + strand, within Ga0059261_0836at 874.840 kb on - strand, within Ga0059261_0836at 874.840 kb on - strand, within Ga0059261_0836at 874.840 kb on - strand, within Ga0059261_0836at 874.902 kb on + strand, within Ga0059261_0836at 874.902 kb on + strand, within Ga0059261_0836at 874.902 kb on + strand, within Ga0059261_0836at 874.903 kb on - strand, within Ga0059261_0836at 874.913 kb on + strand, within Ga0059261_0836at 874.913 kb on + strand, within Ga0059261_0836at 874.914 kb on - strand, within Ga0059261_0836at 874.983 kb on + strand, within Ga0059261_0836at 874.983 kb on + strand, within Ga0059261_0836at 874.984 kb on - strand, within Ga0059261_0836at 874.984 kb on - strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.170 kb on - strand, within Ga0059261_0836at 875.170 kb on - strand, within Ga0059261_0836at 875.170 kb on - strand, within Ga0059261_0836at 875.170 kb on - strand, within Ga0059261_0836at 875.170 kb on - strand, within Ga0059261_0836at 875.253 kb on + strand, within Ga0059261_0836

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.005 mg/ml
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871,640 - Ga0059261_0833 0.52 -0.1
871,657 + Ga0059261_0833 0.53 -0.4
871,658 - Ga0059261_0833 0.53 -0.3
871,757 + Ga0059261_0833 0.60 +0.2
871,757 + Ga0059261_0833 0.60 -0.4
871,757 + Ga0059261_0833 0.60 -0.2
871,757 + Ga0059261_0833 0.60 +1.6
871,758 - Ga0059261_0833 0.60 -0.4
871,758 - Ga0059261_0833 0.60 -0.5
871,758 - Ga0059261_0833 0.60 -0.5
871,886 + Ga0059261_0833 0.69 +0.2
871,886 + Ga0059261_0833 0.69 -0.1
871,886 + Ga0059261_0833 0.69 -1.0
871,886 + Ga0059261_0833 0.69 -1.2
871,887 - Ga0059261_0833 0.69 +0.1
871,887 - Ga0059261_0833 0.69 -0.7
871,887 - Ga0059261_0833 0.69 -0.6
871,887 - Ga0059261_0833 0.69 +1.3
871,887 - Ga0059261_0833 0.69 -0.6
871,887 - Ga0059261_0833 0.69 -0.1
871,887 - Ga0059261_0833 0.69 +0.1
871,887 - Ga0059261_0833 0.69 +1.0
872,089 + Ga0059261_0833 0.83 -0.1
872,090 - +1.0
872,090 - Ga0059261_0833 0.83 +0.6
872,090 - Ga0059261_0833 0.83 -0.4
872,207 + +0.5
872,283 + -0.6
872,283 + -0.7
872,283 + -0.4
872,283 + -0.2
872,283 + -0.0
872,283 + +0.3
872,283 + -0.4
872,284 - -0.8
872,284 - -1.1
872,284 - -0.1
872,381 - Ga0059261_0834 0.27 +0.2
872,381 - Ga0059261_0834 0.27 -0.1
872,381 - Ga0059261_0834 0.27 +0.4
872,408 + Ga0059261_0834 0.46 +0.8
872,408 + Ga0059261_0834 0.46 +0.5
872,408 + Ga0059261_0834 0.46 +0.1
872,408 + Ga0059261_0834 0.46 +0.6
872,409 - Ga0059261_0834 0.47 +0.6
872,409 - Ga0059261_0834 0.47 +0.4
872,409 - Ga0059261_0834 0.47 +0.1
872,409 - Ga0059261_0834 0.47 +0.1
872,409 - Ga0059261_0834 0.47 +1.1
872,506 + -0.7
872,513 + -0.9
872,513 + -0.5
872,514 - +1.0
872,514 - -0.5
872,514 - -0.2
872,724 + Ga0059261_0835 0.12 +0.5
872,774 + Ga0059261_0835 0.15 -0.3
872,774 + Ga0059261_0835 0.15 +0.8
872,774 + Ga0059261_0835 0.15 +0.3
872,775 - Ga0059261_0835 0.15 +0.2
872,801 + Ga0059261_0835 0.17 +0.3
872,801 + Ga0059261_0835 0.17 +0.0
872,802 - Ga0059261_0835 0.17 -0.2
872,802 - Ga0059261_0835 0.17 +0.4
872,805 + Ga0059261_0835 0.17 +0.5
872,805 + Ga0059261_0835 0.17 +0.2
872,805 + Ga0059261_0835 0.17 -0.3
872,805 + Ga0059261_0835 0.17 +0.2
872,805 + Ga0059261_0835 0.17 -0.0
872,806 - Ga0059261_0835 0.17 -0.2
872,806 - Ga0059261_0835 0.17 -0.0
872,806 - Ga0059261_0835 0.17 +0.3
872,806 - Ga0059261_0835 0.17 +0.1
872,806 - Ga0059261_0835 0.17 +1.0
872,806 - Ga0059261_0835 0.17 -0.2
872,806 - Ga0059261_0835 0.17 +0.8
872,806 - +1.6
872,806 - Ga0059261_0835 0.17 -0.9
872,945 + Ga0059261_0835 0.25 +0.2
872,946 - Ga0059261_0835 0.25 -0.0
873,083 + Ga0059261_0835 0.33 -0.4
873,083 + Ga0059261_0835 0.33 +0.6
873,084 - Ga0059261_0835 0.33 +1.4
873,084 - Ga0059261_0835 0.33 -0.6
873,084 - Ga0059261_0835 0.33 +0.4
873,084 - Ga0059261_0835 0.33 +1.2
873,167 + Ga0059261_0835 0.37 -0.6
873,167 + Ga0059261_0835 0.37 +0.1
873,167 + Ga0059261_0835 0.37 -0.0
873,168 - Ga0059261_0835 0.38 -0.2
873,168 - Ga0059261_0835 0.38 -0.2
873,168 - Ga0059261_0835 0.38 -1.3
873,168 - Ga0059261_0835 0.38 -0.4
873,168 - Ga0059261_0835 0.38 +0.6
873,209 + Ga0059261_0835 0.40 +1.4
873,209 + Ga0059261_0835 0.40 -0.4
873,209 + Ga0059261_0835 0.40 +1.9
873,210 - Ga0059261_0835 0.40 +1.2
873,239 + Ga0059261_0835 0.42 -0.3
873,239 + Ga0059261_0835 0.42 +0.5
873,239 + Ga0059261_0835 0.42 +1.8
873,239 + Ga0059261_0835 0.42 +0.6
873,239 + Ga0059261_0835 0.42 -1.6
873,240 - Ga0059261_0835 0.42 +0.5
873,240 - Ga0059261_0835 0.42 -0.0
873,488 + Ga0059261_0835 0.56 +0.2
873,522 + Ga0059261_0835 0.58 -0.3
873,522 + +1.2
873,523 - Ga0059261_0835 0.58 -0.8
873,523 - Ga0059261_0835 0.58 -0.5
873,587 + Ga0059261_0835 0.61 +0.2
873,587 + Ga0059261_0835 0.61 +0.1
873,587 + Ga0059261_0835 0.61 -1.3
873,785 + Ga0059261_0835 0.73 -0.2
873,785 + Ga0059261_0835 0.73 +1.0
873,786 - Ga0059261_0835 0.73 -1.0
873,836 + Ga0059261_0835 0.76 -0.3
873,837 - Ga0059261_0835 0.76 +0.3
874,207 + -0.6
874,324 - +0.6
874,401 + -0.3
874,402 - -0.1
874,407 - +0.4
874,494 + +0.5
874,495 - -0.0
874,495 - -0.7
874,495 - +0.3
874,495 - -1.2
874,743 + Ga0059261_0836 0.27 -0.4
874,743 + Ga0059261_0836 0.27 +0.2
874,743 + Ga0059261_0836 0.27 -1.6
874,743 + Ga0059261_0836 0.27 +0.1
874,743 + Ga0059261_0836 0.27 +0.1
874,744 - Ga0059261_0836 0.27 +1.0
874,744 - Ga0059261_0836 0.27 +1.0
874,744 - Ga0059261_0836 0.27 -0.4
874,745 + Ga0059261_0836 0.28 +0.0
874,745 + Ga0059261_0836 0.28 +0.1
874,745 + Ga0059261_0836 0.28 -0.2
874,746 - Ga0059261_0836 0.28 +2.6
874,746 - Ga0059261_0836 0.28 -1.0
874,839 + Ga0059261_0836 0.35 +0.0
874,839 + Ga0059261_0836 0.35 -0.3
874,839 + Ga0059261_0836 0.35 -0.1
874,839 + Ga0059261_0836 0.35 -0.1
874,840 - Ga0059261_0836 0.35 -0.1
874,840 - Ga0059261_0836 0.35 -0.0
874,840 - Ga0059261_0836 0.35 +0.5
874,902 + Ga0059261_0836 0.40 +0.4
874,902 + Ga0059261_0836 0.40 +0.1
874,902 + Ga0059261_0836 0.40 -0.3
874,903 - Ga0059261_0836 0.40 -0.2
874,913 + Ga0059261_0836 0.41 +0.2
874,913 + Ga0059261_0836 0.41 +0.4
874,914 - Ga0059261_0836 0.41 +0.2
874,983 + Ga0059261_0836 0.47 +0.9
874,983 + Ga0059261_0836 0.47 +0.2
874,984 - Ga0059261_0836 0.47 +0.1
874,984 - Ga0059261_0836 0.47 -1.1
875,169 + Ga0059261_0836 0.62 -0.8
875,169 + Ga0059261_0836 0.62 +0.5
875,169 + Ga0059261_0836 0.62 -1.1
875,169 + Ga0059261_0836 0.62 +0.2
875,169 + Ga0059261_0836 0.62 -0.1
875,169 + Ga0059261_0836 0.62 +0.3
875,169 + Ga0059261_0836 0.62 -0.6
875,169 + Ga0059261_0836 0.62 -0.9
875,169 + Ga0059261_0836 0.62 +0.1
875,169 + Ga0059261_0836 0.62 +1.6
875,170 - Ga0059261_0836 0.62 -0.4
875,170 - Ga0059261_0836 0.62 -0.5
875,170 - Ga0059261_0836 0.62 -0.6
875,170 - Ga0059261_0836 0.62 -0.2
875,170 - Ga0059261_0836 0.62 +0.4
875,253 + Ga0059261_0836 0.69 +0.6

Or see this region's nucleotide sequence