Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0834

Experiment: Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0833 and Ga0059261_0834 overlap by 1 nucleotidesGa0059261_0834 and Ga0059261_0835 are separated by 30 nucleotides Ga0059261_0833: Ga0059261_0833 - Glycerol kinase, at 870,869 to 872,344 _0833 Ga0059261_0834: Ga0059261_0834 - hypothetical protein, at 872,344 to 872,481 _0834 Ga0059261_0835: Ga0059261_0835 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 872,512 to 874,260 _0835 Position (kb) 872 873Strain fitness (log2 ratio) -1 0 1 2at 871.640 kb on - strand, within Ga0059261_0833at 871.657 kb on + strand, within Ga0059261_0833at 871.658 kb on - strand, within Ga0059261_0833at 871.757 kb on + strand, within Ga0059261_0833at 871.757 kb on + strand, within Ga0059261_0833at 871.757 kb on + strand, within Ga0059261_0833at 871.757 kb on + strand, within Ga0059261_0833at 871.758 kb on - strand, within Ga0059261_0833at 871.758 kb on - strand, within Ga0059261_0833at 871.758 kb on - strand, within Ga0059261_0833at 871.886 kb on + strand, within Ga0059261_0833at 871.886 kb on + strand, within Ga0059261_0833at 871.886 kb on + strand, within Ga0059261_0833at 871.886 kb on + strand, within Ga0059261_0833at 871.887 kb on - strand, within Ga0059261_0833at 871.887 kb on - strand, within Ga0059261_0833at 871.887 kb on - strand, within Ga0059261_0833at 871.887 kb on - strand, within Ga0059261_0833at 871.887 kb on - strand, within Ga0059261_0833at 871.887 kb on - strand, within Ga0059261_0833at 871.887 kb on - strand, within Ga0059261_0833at 871.887 kb on - strand, within Ga0059261_0833at 872.089 kb on + strand, within Ga0059261_0833at 872.090 kb on - strandat 872.090 kb on - strand, within Ga0059261_0833at 872.090 kb on - strand, within Ga0059261_0833at 872.207 kb on + strandat 872.283 kb on + strandat 872.283 kb on + strandat 872.283 kb on + strandat 872.283 kb on + strandat 872.283 kb on + strandat 872.283 kb on + strandat 872.283 kb on + strandat 872.284 kb on - strandat 872.284 kb on - strandat 872.284 kb on - strandat 872.381 kb on - strand, within Ga0059261_0834at 872.381 kb on - strand, within Ga0059261_0834at 872.381 kb on - strand, within Ga0059261_0834at 872.408 kb on + strand, within Ga0059261_0834at 872.408 kb on + strand, within Ga0059261_0834at 872.408 kb on + strand, within Ga0059261_0834at 872.408 kb on + strand, within Ga0059261_0834at 872.409 kb on - strand, within Ga0059261_0834at 872.409 kb on - strand, within Ga0059261_0834at 872.409 kb on - strand, within Ga0059261_0834at 872.409 kb on - strand, within Ga0059261_0834at 872.409 kb on - strand, within Ga0059261_0834at 872.506 kb on + strandat 872.513 kb on + strandat 872.513 kb on + strandat 872.514 kb on - strandat 872.514 kb on - strandat 872.514 kb on - strandat 872.724 kb on + strand, within Ga0059261_0835at 872.774 kb on + strand, within Ga0059261_0835at 872.774 kb on + strand, within Ga0059261_0835at 872.774 kb on + strand, within Ga0059261_0835at 872.775 kb on - strand, within Ga0059261_0835at 872.801 kb on + strand, within Ga0059261_0835at 872.801 kb on + strand, within Ga0059261_0835at 872.802 kb on - strand, within Ga0059261_0835at 872.802 kb on - strand, within Ga0059261_0835at 872.805 kb on + strand, within Ga0059261_0835at 872.805 kb on + strand, within Ga0059261_0835at 872.805 kb on + strand, within Ga0059261_0835at 872.805 kb on + strand, within Ga0059261_0835at 872.805 kb on + strand, within Ga0059261_0835at 872.806 kb on - strand, within Ga0059261_0835at 872.806 kb on - strand, within Ga0059261_0835at 872.806 kb on - strand, within Ga0059261_0835at 872.806 kb on - strand, within Ga0059261_0835at 872.806 kb on - strand, within Ga0059261_0835at 872.806 kb on - strand, within Ga0059261_0835at 872.806 kb on - strand, within Ga0059261_0835at 872.806 kb on - strandat 872.806 kb on - strand, within Ga0059261_0835at 872.945 kb on + strand, within Ga0059261_0835at 872.946 kb on - strand, within Ga0059261_0835at 873.083 kb on + strand, within Ga0059261_0835at 873.083 kb on + strand, within Ga0059261_0835at 873.084 kb on - strand, within Ga0059261_0835at 873.084 kb on - strand, within Ga0059261_0835at 873.084 kb on - strand, within Ga0059261_0835at 873.084 kb on - strand, within Ga0059261_0835at 873.167 kb on + strand, within Ga0059261_0835at 873.167 kb on + strand, within Ga0059261_0835at 873.167 kb on + strand, within Ga0059261_0835at 873.168 kb on - strand, within Ga0059261_0835at 873.168 kb on - strand, within Ga0059261_0835at 873.168 kb on - strand, within Ga0059261_0835at 873.168 kb on - strand, within Ga0059261_0835at 873.168 kb on - strand, within Ga0059261_0835at 873.209 kb on + strand, within Ga0059261_0835at 873.209 kb on + strand, within Ga0059261_0835at 873.209 kb on + strand, within Ga0059261_0835at 873.210 kb on - strand, within Ga0059261_0835at 873.239 kb on + strand, within Ga0059261_0835at 873.239 kb on + strand, within Ga0059261_0835at 873.239 kb on + strand, within Ga0059261_0835at 873.239 kb on + strand, within Ga0059261_0835at 873.239 kb on + strand, within Ga0059261_0835at 873.240 kb on - strand, within Ga0059261_0835at 873.240 kb on - strand, within Ga0059261_0835

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.005 mg/ml
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871,640 - Ga0059261_0833 0.52 -0.1
871,657 + Ga0059261_0833 0.53 -0.4
871,658 - Ga0059261_0833 0.53 -0.3
871,757 + Ga0059261_0833 0.60 +0.2
871,757 + Ga0059261_0833 0.60 -0.4
871,757 + Ga0059261_0833 0.60 -0.2
871,757 + Ga0059261_0833 0.60 +1.6
871,758 - Ga0059261_0833 0.60 -0.4
871,758 - Ga0059261_0833 0.60 -0.5
871,758 - Ga0059261_0833 0.60 -0.5
871,886 + Ga0059261_0833 0.69 +0.2
871,886 + Ga0059261_0833 0.69 -0.1
871,886 + Ga0059261_0833 0.69 -1.0
871,886 + Ga0059261_0833 0.69 -1.2
871,887 - Ga0059261_0833 0.69 +0.1
871,887 - Ga0059261_0833 0.69 -0.7
871,887 - Ga0059261_0833 0.69 -0.6
871,887 - Ga0059261_0833 0.69 +1.3
871,887 - Ga0059261_0833 0.69 -0.6
871,887 - Ga0059261_0833 0.69 -0.1
871,887 - Ga0059261_0833 0.69 +0.1
871,887 - Ga0059261_0833 0.69 +1.0
872,089 + Ga0059261_0833 0.83 -0.1
872,090 - +1.0
872,090 - Ga0059261_0833 0.83 +0.6
872,090 - Ga0059261_0833 0.83 -0.4
872,207 + +0.5
872,283 + -0.6
872,283 + -0.7
872,283 + -0.4
872,283 + -0.2
872,283 + -0.0
872,283 + +0.3
872,283 + -0.4
872,284 - -0.8
872,284 - -1.1
872,284 - -0.1
872,381 - Ga0059261_0834 0.27 +0.2
872,381 - Ga0059261_0834 0.27 -0.1
872,381 - Ga0059261_0834 0.27 +0.4
872,408 + Ga0059261_0834 0.46 +0.8
872,408 + Ga0059261_0834 0.46 +0.5
872,408 + Ga0059261_0834 0.46 +0.1
872,408 + Ga0059261_0834 0.46 +0.6
872,409 - Ga0059261_0834 0.47 +0.6
872,409 - Ga0059261_0834 0.47 +0.4
872,409 - Ga0059261_0834 0.47 +0.1
872,409 - Ga0059261_0834 0.47 +0.1
872,409 - Ga0059261_0834 0.47 +1.1
872,506 + -0.7
872,513 + -0.9
872,513 + -0.5
872,514 - +1.0
872,514 - -0.5
872,514 - -0.2
872,724 + Ga0059261_0835 0.12 +0.5
872,774 + Ga0059261_0835 0.15 -0.3
872,774 + Ga0059261_0835 0.15 +0.8
872,774 + Ga0059261_0835 0.15 +0.3
872,775 - Ga0059261_0835 0.15 +0.2
872,801 + Ga0059261_0835 0.17 +0.3
872,801 + Ga0059261_0835 0.17 +0.0
872,802 - Ga0059261_0835 0.17 -0.2
872,802 - Ga0059261_0835 0.17 +0.4
872,805 + Ga0059261_0835 0.17 +0.5
872,805 + Ga0059261_0835 0.17 +0.2
872,805 + Ga0059261_0835 0.17 -0.3
872,805 + Ga0059261_0835 0.17 +0.2
872,805 + Ga0059261_0835 0.17 -0.0
872,806 - Ga0059261_0835 0.17 -0.2
872,806 - Ga0059261_0835 0.17 -0.0
872,806 - Ga0059261_0835 0.17 +0.3
872,806 - Ga0059261_0835 0.17 +0.1
872,806 - Ga0059261_0835 0.17 +1.0
872,806 - Ga0059261_0835 0.17 -0.2
872,806 - Ga0059261_0835 0.17 +0.8
872,806 - +1.6
872,806 - Ga0059261_0835 0.17 -0.9
872,945 + Ga0059261_0835 0.25 +0.2
872,946 - Ga0059261_0835 0.25 -0.0
873,083 + Ga0059261_0835 0.33 -0.4
873,083 + Ga0059261_0835 0.33 +0.6
873,084 - Ga0059261_0835 0.33 +1.4
873,084 - Ga0059261_0835 0.33 -0.6
873,084 - Ga0059261_0835 0.33 +0.4
873,084 - Ga0059261_0835 0.33 +1.2
873,167 + Ga0059261_0835 0.37 -0.6
873,167 + Ga0059261_0835 0.37 +0.1
873,167 + Ga0059261_0835 0.37 -0.0
873,168 - Ga0059261_0835 0.38 -0.2
873,168 - Ga0059261_0835 0.38 -0.2
873,168 - Ga0059261_0835 0.38 -1.3
873,168 - Ga0059261_0835 0.38 -0.4
873,168 - Ga0059261_0835 0.38 +0.6
873,209 + Ga0059261_0835 0.40 +1.4
873,209 + Ga0059261_0835 0.40 -0.4
873,209 + Ga0059261_0835 0.40 +1.9
873,210 - Ga0059261_0835 0.40 +1.2
873,239 + Ga0059261_0835 0.42 -0.3
873,239 + Ga0059261_0835 0.42 +0.5
873,239 + Ga0059261_0835 0.42 +1.8
873,239 + Ga0059261_0835 0.42 +0.6
873,239 + Ga0059261_0835 0.42 -1.6
873,240 - Ga0059261_0835 0.42 +0.5
873,240 - Ga0059261_0835 0.42 -0.0

Or see this region's nucleotide sequence